PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00803g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 765aa MW: 82805.4 Da PI: 5.7584 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 337.9 | 1.8e-103 | 405 | 764 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +++L+++Ae v++g+ laq +Larl+++ sp g+p+ R+a+y +eAL+ l+ ++++l ++++s+ s + ++ a+k fse Peaxi162Scf00803g00003.1 405 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHANTNNLNPSMASSPFS---LIFKIGAYKSFSE 486 689***************************************************999999888888888...************* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171 +sP+ +f+++t+Nqa+le ++g er+Hi+Dfdi++G+QW++L+q+La R++g+p+l++T+++sp+++++ el t+e+L +fA+e Peaxi162Scf00803g00003.1 487 ISPVAQFANFTCNQALLEVLDGFERIHIVDFDIGYGGQWASLMQELALRSGGAPTLKVTALASPSTHDQLELGLTRENLIQFASE 571 ************************************************************************************* PP GRAS 172 lgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 +++ fef++l ++l++ ++L v+++Ea+aVnl + + + ++sl+ vL++vk+lsP++vv v++ +d+++ +F Peaxi162Scf00803g00003.1 572 INMAFEFEILSIDSLNST-SWSLppLVSENEAIAVNLPASSLSSY--QLSLPL----VLRFVKQLSPRIVVSVDRGCDRTDLPFP 649 *********977766665.4555334788**********777776..555555....**************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +++++al+ ys l++sl+a + ++ +k+Er+ll++ i+ +v+ + ++ e+ ++Wr+ + ++G++p+pls+++++qa++ Peaxi162Scf00803g00003.1 650 NHVIQALQSYSNLLESLDAV-NVNFDALQKIERFLLQPGIERIVMGRFRS----PEKTQHWRSLFLSSGLSPLPLSNFTESQAEC 729 *****************665.3466999****************998877....9****************************** PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++++g++ve+++ slvl+W++++Lvs+SaWr Peaxi162Scf00803g00003.1 730 VVKRTPVRGFHVEKRQSSLVLCWQRKELVSASAWR 764 **********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.004 | 378 | 744 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-101 | 405 | 764 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MKGMPLPFEF EGKGVLDLDI LFNKNSILNS WNNKNSHNSS TSKESCYFVN SPSAVLDTIR 60 SPIRPITSSS TLSSSLGGGG GGGTASTDTA GGVAAVSTNP SSKWQQQQQD NTTATSSNVG 120 AESELPPPSL EMGGGGGTAT AAAAATEEWE GGISEMASPC QEQSILRWIM GDVDDPSMAN 180 LNKVLQVSGP VDYEFNGGFG VVDQGFGVDP ANQIGSFMPS VSVSSSSFPP TSARMNSDKI 240 GLGSNTATNL SQNPIFPSLS NNLGPGGFGQ AQQQPFENSD LKPQGFNSQF LINQHQTQIP 300 QNPSFLLPLP FAQQEQNLVL PPQAKRHNPG TIGGLEQGSQ ISKGLFLDAG QQQPTPPQGL 360 AHQLQLLPHF RPGAMGTKPK MVGEEMGQFH QLQQHQQQQQ QQAIIDQLFK AAELVQTGNP 420 VLAQGILARL NHQLSPIGKP FYRAAFYCKE ALQLLLHANT NNLNPSMASS PFSLIFKIGA 480 YKSFSEISPV AQFANFTCNQ ALLEVLDGFE RIHIVDFDIG YGGQWASLMQ ELALRSGGAP 540 TLKVTALASP STHDQLELGL TRENLIQFAS EINMAFEFEI LSIDSLNSTS WSLPPLVSEN 600 EAIAVNLPAS SLSSYQLSLP LVLRFVKQLS PRIVVSVDRG CDRTDLPFPN HVIQALQSYS 660 NLLESLDAVN VNFDALQKIE RFLLQPGIER IVMGRFRSPE KTQHWRSLFL SSGLSPLPLS 720 NFTESQAECV VKRTPVRGFH VEKRQSSLVL CWQRKELVSA SAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-35 | 404 | 764 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015062026.1 | 0.0 | scarecrow-like protein 22 | ||||
TrEMBL | A0A0V0IWJ2 | 0.0 | A0A0V0IWJ2_SOLCH; Putative scarecrow-like protein 22-like | ||||
STRING | PGSC0003DMT400066799 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6253 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-136 | GRAS family protein |