PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00797g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Trihelix | ||||||||
Protein Properties | Length: 410aa MW: 46818.6 Da PI: 6.2655 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 78.1 | 1.4e-24 | 103 | 180 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W ++e++aLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk ke +++ ++ f+++ Peaxi162Scf00797g00110.1 103 WVHEETRALISLRREIDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKEKNGSV------KMNCFKEI 180 *******************************************************************985......34446555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-4 | 94 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.537 | 95 | 159 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-4 | 99 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.02E-28 | 101 | 166 | No hit | No description |
Pfam | PF13837 | 1.6E-18 | 102 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
NFAQARPQSP SLITHLEKPK LSSNYLTFSN IIIIMYMSNK PQPIDFYKQE SLTTEDPQTH 60 KMILDPQQLL IPTTTTTDTT SSGGEENPSS SDIKTPKKRA ETWVHEETRA LISLRREIDS 120 LFNTSKSNKH LWDQISLKMR EKGFDRSPTM CTDKWRNLLK EFKKAKEKNG SVKMNCFKEI 180 EEILRDRSNG GGGYKSPPAP KVDAFMQFAE KGLDDTNITF GPVEENGRPT LNLERRLDHD 240 GHPLAITAAD AVTASGVSPW NWRETPGTGE QSQSYEGRVI SVKWGDYTKR IGIDGTADAI 300 KEAIKSAFRL RTKRAFWLED EDNIVRTLDR DMPLGNYILH VDEGLTVKVC MYDEADHLPV 360 HTEDKTFYSE DDFRDFLSRR SWTCLREFNG YRNVDSMDEL CPGAVYRGVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-38 | 97 | 179 | 1 | 86 | DNA binding protein GT-1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016569813.1 | 0.0 | PREDICTED: trihelix transcription factor GT-4-like isoform X1 | ||||
Swissprot | Q9FX53 | 1e-166 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A2G2WYF4 | 0.0 | A0A2G2WYF4_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G3CMH9 | 0.0 | A0A2G3CMH9_CAPCH; Trihelix transcription factor GT-1 | ||||
STRING | XP_009784713.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5113 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25990.1 | 1e-168 | Trihelix family protein |
Publications ? help Back to Top | |||
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