PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00780g00412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 347aa MW: 37111 Da PI: 9.3185 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 145 | 170 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + C++Gd+C+FaHg+ Peaxi162Scf00780g00412.1 145 KTRLCSKYNSPEGCRFGDKCHFAHGE 170 8***********************96 PP | |||||||
2 | zf-CCCH | 34 | 5e-11 | 309 | 332 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt++C +fa+ G C +G++C+FaHg Peaxi162Scf00780g00412.1 309 KTKICENFAK-GSCTFGEKCHFAHG 332 89********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.4 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.676 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-7 | 80 | 103 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.1 | 86 | 103 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-13 | 141 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-8 | 142 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.013 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 145 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.3E-14 | 206 | 285 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.0E-10 | 213 | 283 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.6E-14 | 214 | 283 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.299 | 214 | 278 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.04E-13 | 216 | 278 | No hit | No description |
Pfam | PF00013 | 2.8E-10 | 216 | 280 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF90229 | 2.62E-8 | 306 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 306 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 307 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.098 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 309 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
ISPALPFPYP CPDTRTLPSA NSRVLISYFS LSPTSSNTTS SMEFESGRKR GRQHGPINGN 60 ASFKKSKQEL ESISTGLGSK LKPCTKFFST SGCPFGEGCH FLHYVPGGLK AVTQMLGSNP 120 ALPAASRNSA APPSFPDGSS PPAVKTRLCS KYNSPEGCRF GDKCHFAHGE WELGKPTAPL 180 HEESHGMFQM HGMYGNRAET TPAGFGAAAS FGSSATAKIS VDASLAGPII GKGGVNSKQI 240 CHMTGAKLSI RDHESDPNLK NIELEGTIDQ IEQASRMVRE LILSVRTAAA PQMRNPGSRP 300 TSNYKTKIKT KICENFAKGS CTFGEKCHFA HGAEELREFG ANKPQIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803026.1 | 1e-180 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_016471702.1 | 1e-180 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-104 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S4A4V5 | 1e-179 | A0A1S4A4V5_TOBAC; zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A1U7YM22 | 1e-179 | A0A1U7YM22_NICSY; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | XP_009803026.1 | 1e-180 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-51 | C3H family protein |