PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00777g00521.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 312aa    MW: 34943.9 Da    PI: 5.5154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00777g00521.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd  lv +v+++G+g+W++++ + g++R+ k+c++rw +yl
  Peaxi162Scf00777g00521.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTKTGLRRCSKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding49.41e-1567112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Peaxi162Scf00777g00521.1  67 RGNFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.873965IPR017930Myb domain
SuperFamilySSF466893.39E-3111108IPR009057Homeodomain-like
SMARTSM007175.6E-151363IPR001005SANT/Myb domain
PfamPF002495.8E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241568IPR009057Homeodomain-like
CDDcd001672.81E-111661No hitNo description
PROSITE profilePS5129420.25366116IPR017930Myb domain
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002498.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2569117IPR009057Homeodomain-like
CDDcd001671.19E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTKTGLRRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ  120
ETGDDLFSRE NGYFSSSNST SKGQWERTLQ ADINMAKQAL HNALTLENLS SCVKQESQVS  180
TYASSTENIA RLLKGWMGSS TNNSDYSKTS SNNVATADSS SCDGTPSAES EIGLMESFKS  240
LFGFESFESS SSDQFSQTAS PDASKLKGEI KKEANEQMPL SVMLENWLLD ENTIQGKDDL  300
SNFSFDETND LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-27141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-27141164105C-Myb DNA-Binding Domain
1msf_C9e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4492531e-144GQ449253.1 Petunia x hybrida cultivar V26 regulatory factor EOBVI mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629125.10.0PREDICTED: myb-related protein 306-like isoform X2
RefseqXP_016432585.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-106MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S3WY160.0A0A1S3WY16_TOBAC; myb-related protein 306-like
STRINGXP_009629125.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-100myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]