PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00776g00311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 447aa MW: 49240.6 Da PI: 6.8326 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 257.1 | 6.2e-79 | 163 | 390 | 1 | 230 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l+++L++cA+avs+gdl aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e + s e l+++++++ Peaxi162Scf00776g00311.1 163 LKHVLVACAKAVSDGDLLTAQLLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHVLY 244 689******************************************************************9...9*********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 e++P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+ Peaxi162Scf00776g00311.1 245 EICPYFKFGYMSANGAIAEAMKDENRVHIIDFQITQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVGKRLSKL 329 ****************************************************************998899999************ PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230 Ae+++vpfef++ +a + +d+++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++ Peaxi162Scf00776g00311.1 330 AEAFKVPFEFHA-AAMSGSDVQPENLGIRPGEALAVNFAFTLHHMPDESVSTENHRDRLLRM 390 ************.899********************************************97 PP | |||||||
2 | GRAS | 47.9 | 2.3e-15 | 391 | 447 | 317 | 374 |
GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+++aGF+p+pls+ +++++k+ll+ +++ yr+ee++g+l+lgW++r Lv+ +aW+ Peaxi162Scf00776g00311.1 391 SRFRMAGFSPYPLSSLVNATIKTLLESYSD-KYRLEERDGALYLGWMNRDLVASCAWK 447 69***************************5.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.015 | 137 | 447 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-76 | 163 | 390 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-13 | 391 | 447 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MKASQRIRRS AMSNTLYYQP VQKAEPYCLP QFQSLDNHLS YINGSHGGNN SFQTASGSYA 60 SHHSPATASF SSNGSPICHQ ESQSNLSDAR KSPDTNYSSP ISGSCITDDV NDFMSKLKEL 120 ETVMLGPDSD FLESYDNSLP SSIASPEINS WRQMMEATPR RDLKHVLVAC AKAVSDGDLL 180 TAQLLISELR QMVSVSGEPI QRLGAYILEG LVARLAASGS SICKSLRCKE PASFELLSYM 240 HVLYEICPYF KFGYMSANGA IAEAMKDENR VHIIDFQITQ GSQWVTLIQA FAARPGGPPH 300 IRITGIDDST SAYARGGGLN IVGKRLSKLA EAFKVPFEFH AAAMSGSDVQ PENLGIRPGE 360 ALAVNFAFTL HHMPDESVST ENHRDRLLRM SRFRMAGFSP YPLSSLVNAT IKTLLESYSD 420 KYRLEERDGA LYLGWMNRDL VASCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-34 | 170 | 389 | 26 | 239 | Protein SCARECROW |
5b3h_A | 1e-34 | 170 | 389 | 25 | 238 | Protein SCARECROW |
5b3h_D | 1e-34 | 170 | 389 | 25 | 238 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250098.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_019250099.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 1e-151 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1J6I6W3 | 0.0 | A0A1J6I6W3_NICAT; Scarecrow-like transcription factor pat1 | ||||
STRING | XP_009784447.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-154 | GRAS family protein |
Publications ? help Back to Top | |||
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