PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00774g00221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 77aa MW: 8893.39 Da PI: 8.0267 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 32.4 | 1.2e-10 | 2 | 56 | 284 | 342 |
GRAS 284 kvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllr 342 +E++++g+ei+n++ace+++r+er e +++ Wr aGF+++pl+++++k++k+ ++ Peaxi162Scf00774g00221.1 2 LYEKVIFGKEIMNILACENTARVERPEPYKQsWR-----AGFQQLPLNQDIMKEVKAKIA 56 579************************9864386.....8**************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.3E-8 | 2 | 56 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MLYEKVIFGK EIMNILACEN TARVERPEPY KQSWRAGFQQ LPLNQDIMKE VKAKIATDAA 60 GIERQSYLCS LLLETCR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798121.1 | 1e-18 | PREDICTED: scarecrow-like protein 30 | ||||
Refseq | XP_016509006.1 | 1e-18 | PREDICTED: scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 1e-15 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1S4D6M8 | 3e-17 | A0A1S4D6M8_TOBAC; scarecrow-like protein 30 | ||||
TrEMBL | A0A1U7Y860 | 3e-17 | A0A1U7Y860_NICSY; scarecrow-like protein 30 | ||||
TrEMBL | A0A314UQS4 | 2e-17 | A0A314UQS4_PRUYE; Scarecrow-like protein 14 | ||||
STRING | XP_009798121.1 | 5e-18 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 5e-18 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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