PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00774g00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 222aa MW: 25649.3 Da PI: 6.9815 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 26.9 | 5.7e-09 | 62 | 110 | 3 | 51 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa 51 +lL++cA+a+++ d++ a + L+ +++++s +gd +R+a+y++ L+a Peaxi162Scf00774g00220.1 62 SLLTQCAQAITNYDTRTAYERLKLIRQHSSLYGDEAERIAHYIADELHA 110 79*****************************************988875 PP | |||||||
2 | GRAS | 82.8 | 5.8e-26 | 109 | 216 | 154 | 262 |
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 ++e++eetg+rLa++++ ++vpfe+n+ +ak+ ++++le+L+++++E+l+Vn+ ++l ++++e ++s+rd+vL+l+++++P+v Peaxi162Scf00774g00220.1 109 HAERVEETGHRLANYCKMFDVPFEYNA-IAKKGDSIQLEDLKINRNEMLVVNCFYRLIYVPAEIEYQNSPRDDVLRLIRQIKPDV 192 6799***********************.7******************************************************** PP GRAS 239 vvvveqeadhnsesFlerfleale 262 + + + +ns+ F+++f ea+ Peaxi162Scf00774g00220.1 193 FLHGIINGTYNSSFFVTKFKEAVF 216 *********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.874 | 1 | 222 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-23 | 109 | 216 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MTLICSYNNP GFYTDPPCCQ CDQSIEEKLA YKPLPGQSRI PKQGRPRANA KPVNTNPLDL 60 WSLLTQCAQA ITNYDTRTAY ERLKLIRQHS SLYGDEAERI AHYIADELHA ERVEETGHRL 120 ANYCKMFDVP FEYNAIAKKG DSIQLEDLKI NRNEMLVVNC FYRLIYVPAE IEYQNSPRDD 180 VLRLIRQIKP DVFLHGIING TYNSSFFVTK FKEAVFNLLC LT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165701.1 | 2e-55 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9 | ||||
TrEMBL | A0A2G2ZE12 | 2e-53 | A0A2G2ZE12_CAPAN; Scarecrow-like protein 34 | ||||
TrEMBL | A0A2G3CBK2 | 3e-53 | A0A2G3CBK2_CAPCH; Scarecrow-like protein 30 | ||||
STRING | XP_010535475.1 | 5e-46 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17136 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 7e-37 | GRAS family protein |