PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00774g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 751aa MW: 84884.3 Da PI: 5.39 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 369.2 | 5.6e-113 | 377 | 748 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lL++cA+ v+++d + a++ L+++++++sp+gd+ qRla++f+ +L+arla+++++ly+al+p++ + +e+l+a++++ Peaxi162Scf00774g00022.1 377 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQLYAALAPKRIT---AAEKLKAYQAYL 458 6789***************************************************************999...9*********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 +P+ k++ + aN++I +++ +++H++Df+i++G+QWp L+q L++ p+gpp+lRiTg++ p++g +e+le+tg+rLak+ Peaxi162Scf00774g00022.1 459 SSCPFKKIAIFFANKMIFHTASNGRTLHVVDFGIQYGFQWPILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEKTGSRLAKY 543 *******************************************************************9***************** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 +e++ vpfe+n+++a+++e++++e+L++ +gE++aVn+ ++ ++llde+v ++s+rd+vL+l+++++P+++v + + +++s+ F Peaxi162Scf00774g00022.1 544 CERFSVPFEYNAIAAQNWESIRIEDLKLASGECVAVNCLFRFKNLLDETVVVDSPRDAVLRLIRKMNPDIFVQAVINGSYSSPFF 628 ************************************************************************************* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 ++rf eal yys+lfd+++a+l+r++++r E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ + Peaxi162Scf00774g00022.1 629 VTRFREALFYYSTLFDMFDATLSRDDQQRFHFEQEFYKREAMNVIACEGSERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLR 713 ************************************************************************************* PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++ +++ + +e+ ++++gWk+r + + S+W Peaxi162Scf00774g00022.1 714 CKVKDGYKKDFVFDEDGSWMLQGWKGRVVCASSCW 748 *******999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.346 | 351 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-110 | 377 | 748 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MDPRFIPLPD QVDTFAVEDL INLSSFEESL NHPLSNKDDY VSFGVPYNTS SPDIGNFALS 60 SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS FYEALGKTYP 120 PSPFRTPDNV EHQLESPDSI FWNSTEHSTS SSNTGSNSTD HQSIIDPGES RLPMWSHPSE 180 NSIKPLLHSN SERSHGSLNN FNNSNSHMYS SVNPNVVPNV FTDSESILQF KRGMEEASKF 240 LPNLSQFVID LDKYTFPPKM EEVTKEAVVK VEKDEKNHSP NGTKGRKHQY PEDSDYEDER 300 NNKQSAIYVE EEVELSEMFD KVLLCTDKGE TFCGGDVKLE MSSEVDKSLV QNGLAHGSNG 360 GKNRAKKQGT KNEAVDLRTL LISCAQSVAA DDRRTANEQL KQIRQHSSPT GDAYQRLASV 420 FADGLEARLA GTGTQLYAAL APKRITAAEK LKAYQAYLSS CPFKKIAIFF ANKMIFHTAS 480 NGRTLHVVDF GIQYGFQWPI LIQLLSQIPG GPPKLRITGI DLPQPGFRPA ESLEKTGSRL 540 AKYCERFSVP FEYNAIAAQN WESIRIEDLK LASGECVAVN CLFRFKNLLD ETVVVDSPRD 600 AVLRLIRKMN PDIFVQAVIN GSYSSPFFVT RFREALFYYS TLFDMFDATL SRDDQQRFHF 660 EQEFYKREAM NVIACEGSER VERPETYKQW QVRNMRAGFK LLPLNQQLMQ KLRCKVKDGY 720 KKDFVFDEDG SWMLQGWKGR VVCASSCWVP A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-47 | 360 | 750 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-47 | 360 | 750 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606498.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1S4BAP2 | 0.0 | A0A1S4BAP2_TOBAC; scarecrow-like protein 14 | ||||
STRING | XP_009606498.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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