PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00772g00076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28633.2 Da PI: 6.3517 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.5e-16 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+riNs ++ Lr+l+P + + kKls +++ k+ +YI +Lq Peaxi162Scf00772g00076.1 73 KKLNHNASERDRRKRINSLYSSLRSLIPAsD---HTKKLSIPSTVSKVLKYIPELQ 125 6789*************************44...6666***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.57 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 73 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-16 | 73 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.82E-13 | 73 | 129 | No hit | No description |
Pfam | PF00010 | 2.6E-13 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-11 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLAISSSPLF STNNFGWLLD DPITHELLNT STGTSGSAVA LNSSSSQTRL QHCESKKFDQ 60 IDGDHHQPHE MVKKLNHNAS ERDRRKRINS LYSSLRSLIP ASDHTKKLSI PSTVSKVLKY 120 IPELQDEVER LIKKKEELTS RTISKTEHLA DFNKQTNGGI ESSSLIVSAS QAGDNEVVIH 180 LSTRKINKGS FAEAVSELED EGLVLLNASC LETFEERVFY TLHFQVQGTM AVEVDMLRDK 240 LSSYFEKEEK LLLQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018633333.1 | 1e-128 | PREDICTED: transcription factor ORG2-like isoform X2 | ||||
TrEMBL | A0A1S4AF17 | 1e-125 | A0A1S4AF17_TOBAC; transcription factor ORG2-like | ||||
STRING | XP_009625856.1 | 1e-126 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 7e-51 | bHLH family protein |