PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00763g00441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 322aa MW: 37140.2 Da PI: 5.4331 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl Peaxi162Scf00763g00441.1 14 KGLWSPEEDEKLYNYITKFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.866 | 9 | 65 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-24 | 9 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.98E-22 | 12 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.23E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-13 | 65 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.056 | 66 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 7.27 | 66 | 105 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGRHSSFVKE KLRKGLWSPE EDEKLYNYIT KFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQEEEDMIIS LHQVLGNRTD NEIKNFWNSY LKKKLIKQGI DPNTHQPLSE 120 NQVRNETDCK DKASTSTQIQ QPFNLSKRNF NYEASRQLTE ASKDQLVSKQ VFDPLFLYEF 180 QANVNPSGYN LRPYDHNQNQ IEGNTNFGFF SMPSLTNFEQ GHMTETDFSE SSSSRMSLLY 240 ISEAKESSSN SSNMISHHNA AGIQMNEMLE NSQALSWDVD NKIDSLFQYP YDGIKNEEDF 300 NNPLSSLSED LSGENLDVFH QI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 12 | 105 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473082.1 | 1e-176 | PREDICTED: myb-related protein 330-like isoform X2 | ||||
TrEMBL | A0A1S4A8W0 | 1e-175 | A0A1S4A8W0_TOBAC; myb-related protein 330-like isoform X2 | ||||
STRING | XP_009773279.1 | 1e-173 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-66 | myb domain protein 86 |