PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00760g00035.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 740aa MW: 83458.6 Da PI: 6.2883

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00760g00035.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.1	2e-118	368	737	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 ++ L+ cA+av+++d + a+++L+++++++sp gd mqRla+yf+++L+ar+a+s++++y al + +ts +++l+ ++lf Peaxi162Scf00760g00035.1 368 RTILTLCAQAVAADDRRTANEFLKQIRQNSSPMGDGMQRLAHYFANGLEARMAGSGTQIYTALISMPTS---AADVLKGYQLFLA 449 67899********************************************************999998...89******* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 ++P+ k+s++ N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++A Peaxi162Scf00760g00035.1 450 ACPFRKLSNFFSNKTIMNLAENASTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPSPGfrPAERVEETGKRLANYA 534 **************************************************************9************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 e+++vpfef++ +a+++e++++e+L++k++E+l+Vn+ ++l +llde+v ++s+rd+vL+l+++l+P+v++ + n++ F Peaxi162Scf00760g00035.1 535 ESFKVPFEFKA-IAQKWETIKVEDLNIKKDEVLVVNCLYRLRNLLDETVVVDSPRDKVLNLIRKLNPDVFIQGIVNGAFNAPFFI 618 *******.7******************************************************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +rf eal +ys+lfd+lea++p+e ++r+ +E+ +lg e++nv+ace aer+er et+++W+ r +aGF+++pl+e+++ a+ Peaxi162Scf00760g00035.1 619 TRFREALFHYSSLFDMLEANIPPEIHDRMLIEKIILGHEAMNVIACEAAERIERPETYKQWQVRNIRAGFRQLPLNEEIMRIARE 703 ********************************************************************************* PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +++d + ++ + ++l++gWk+r ++++S W+ Peaxi162Scf00760g00035.1 704 RVKVHHKD-FVIDVDGHWLLQGWKGRIVFALSTWK 737 **77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.914	341	718	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-116	368	737	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MDRNYKALYE ATPAIKLRDE GLSFFPDLNR INYLRVSDTI VQKNHVAIPQ SQPDPNPDVL 60 VPSTVDNSHE DYDFSDVVLK YISEMLMEED IEEKVCMFQE SAALQAAERS FYDVIGEKYP 120 PSPNQKLPDL GQNGLYAGDY SYDYSCVTDV SDGLLCPNWK PDLGDGDSSH PEHVPVDVAL 180 PSTSQSSHSS SSSSGTITDV HLDSPMSSLW IPDIFNDSES IMQFKKGVEE ASKFLPTGNS 240 LFLDVKYNVV GKEDNDNRKD AVVKVENNGK QLSPEGSRGK KNIHHHDIDA VEERSTKQSA 300 VFSESTVRSE MFDKVLLCSG GKNESALREA WKIASNKNAP EDDLPKGPNG RKSRRKKQGG 360 KRDVVDLRTI LTLCAQAVAA DDRRTANEFL KQIRQNSSPM GDGMQRLAHY FANGLEARMA 420 GSGTQIYTAL ISMPTSAADV LKGYQLFLAA CPFRKLSNFF SNKTIMNLAE NASTVHIIDF 480 GIMYGFQWPC FIQRLSSRPG GPPKLRITGI DFPSPGFRPA ERVEETGKRL ANYAESFKVP 540 FEFKAIAQKW ETIKVEDLNI KKDEVLVVNC LYRLRNLLDE TVVVDSPRDK VLNLIRKLNP 600 DVFIQGIVNG AFNAPFFITR FREALFHYSS LFDMLEANIP PEIHDRMLIE KIILGHEAMN 660 VIACEAAERI ERPETYKQWQ VRNIRAGFRQ LPLNEEIMRI ARERVKVHHK DFVIDVDGHW 720 LLQGWKGRIV FALSTWKAAY

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MDRNYKALYE ATPAIKLRDE GLSFFPDLNR INYLRVSDTI VQKNHVAIPQ SQPDPNPDVL  60
VPSTVDNSHE DYDFSDVVLK YISEMLMEED IEEKVCMFQE SAALQAAERS FYDVIGEKYP  120
PSPNQKLPDL GQNGLYAGDY SYDYSCVTDV SDGLLCPNWK PDLGDGDSSH PEHVPVDVAL  180
PSTSQSSHSS SSSSGTITDV HLDSPMSSLW IPDIFNDSES IMQFKKGVEE ASKFLPTGNS  240
LFLDVKYNVV GKEDNDNRKD AVVKVENNGK QLSPEGSRGK KNIHHHDIDA VEERSTKQSA  300
VFSESTVRSE MFDKVLLCSG GKNESALREA WKIASNKNAP EDDLPKGPNG RKSRRKKQGG  360
KRDVVDLRTI LTLCAQAVAA DDRRTANEFL KQIRQNSSPM GDGMQRLAHY FANGLEARMA  420
GSGTQIYTAL ISMPTSAADV LKGYQLFLAA CPFRKLSNFF SNKTIMNLAE NASTVHIIDF  480
GIMYGFQWPC FIQRLSSRPG GPPKLRITGI DFPSPGFRPA ERVEETGKRL ANYAESFKVP  540
FEFKAIAQKW ETIKVEDLNI KKDEVLVVNC LYRLRNLLDE TVVVDSPRDK VLNLIRKLNP  600
DVFIQGIVNG AFNAPFFITR FREALFHYSS LFDMLEANIP PEIHDRMLIE KIILGHEAMN  660
VIACEAAERI ERPETYKQWQ VRNIRAGFRQ LPLNEEIMRI ARERVKVHHK DFVIDVDGHW  720
LLQGWKGRIV FALSTWKAAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-55	347	736	1	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019241581.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1J6KJ68	0.0	A0A1J6KJ68_NICAT; Scarecrow-like protein 14
STRING	XP_009764081.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]