PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00753g00332.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 749aa    MW: 85204 Da    PI: 7.4057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00753g00332.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-05138186432
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.as...................k 32 
                               + n++E+r+R ++ + f+  r+ lP+ ++                   +
  Peaxi162Scf00753g00332.1 138 KTNIIEQRYRTNVGELFAHVRKKLPWaDPkvvkevidvelykllgertA 186
                               45************************55466666666666666666661 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045588.6E-5410166IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045571.4E-12169260IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
PfamPF007492.4E-60267417IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:3.40.50.6205.7E-29267336IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523743.22E-67267554No hitNo description
PRINTSPR009877.2E-5271283IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780274285IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009877.2E-5300313IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.101.8E-30340420No hitNo description
Gene3DG3DSA:3.40.50.6205.7E-29421469IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PfamPF007497.9E-29434545IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:1.10.1160.101.0E-30470547IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507154.66E-33548690IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039501.7E-28548689IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.105.2E-30556669IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MVKEDNNAAA LELFLKIGLD DKTAKNTLAN NKVTTNLTAV IHEAAVTGGC DRAVGNLLYT  60
VATKYPANAL NHRPTLLQYI VSAKIKTPAQ LEAAFTFLGA TASDNLKVHE FEESCGVGVE  120
VSKDDIDRTV SEVFAEKKTN IIEQRYRTNV GELFAHVRKK LPWADPKVVK EVIDVELYKL  180
LGERTAADNE KPVKKKKEKP VKAEVAKVEE TPAPKPSEEE LNPYSIFPAP EENYKVHTEV  240
YFSDRPVLRA CNSKELLEKH LTVTGRKVLT RFPPEPNGYL HIGHAKAMFV DFGLAKERGG  300
GCYLRFDDTN PEAEKKEYID HIKEIVGWMG WEPFKITYTS DYFQDLYELA VELIRRGHAY  360
VDHQTPEEVK EYREKKMNSP WRDRPIEESL RLFDEMKRGM IDEGKATLRM KQDMQSDNFN  420
ISLLIPMQEI NGASTPLCTL EFETRRASYY WLLDALGLYQ PFVWEYSRLN VSNTVMSKRK  480
LNHLVTKQWV DGWDDPRLMT LAGLRRRGVT STAINAFVRG IGITRSDCSM IHLSRLEYHI  540
REELNKTAPR TMVVLNPLKV VITNLEAGIV MDLDAKKWPE APADDASSFY KIPFSRVVYI  600
ERTDFRLKDS KDYYGLAPGK SVLLRYAYPI KCTDVIFADD KETVLEIKAE YDPSKTIKPK  660
GVLHWVAEPS PGADPLKVEV RLFDRLFLSE GILQLTGIQL LKSWSSIGLS RCVIAMARVE  720
SFEIMVKSGH AKNGCLDQFL FQILMLSNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C1e-1511068730720Glutamine--tRNA ligase
4ye6_A1e-151106877697Glutamine--tRNA ligase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-69HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-69HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010320758.10.0glutamine--tRNA ligase isoform X1
SwissprotQ8W4F30.0SYQ_ARATH; Glutamine--tRNA ligase, cytoplasmic
TrEMBLA0A3Q7GEE90.0A0A3Q7GEE9_SOLLC; Uncharacterized protein
STRINGSolyc05g009220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213
Publications ? help Back to Top
  1. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  2. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]