PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00753g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 24235.1 Da PI: 8.4873 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F ++ L H++ H Peaxi162Scf00753g00021.1 60 YECQYCSREFANSQALGGHQNAH 82 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.72E-6 | 57 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 58 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-5 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.175 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAEVLEFPSK PSKIPTSNGR LKLFGFNVTP DDQEEVDPHT NTSSESPESG VFQPSDGRKY 60 ECQYCSREFA NSQALGGHQN AHKKERQQLK RAQIQASRNA YMRNPISSAF APPSHLLAPA 120 GSMMVPMVAS SSPSWVYVPR AAPQFHMSHG CVFPTSSMGG KGIGNFQYTG SVADSSLTSV 180 GPQQVKAHSA KVNGPSMSRV SRADIGPNFD DAFGLDLHLS LAPAAP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621927.1 | 1e-128 | PREDICTED: zinc finger protein 6-like | ||||
Refseq | XP_016489115.1 | 1e-128 | PREDICTED: zinc finger protein 6 | ||||
Refseq | XP_019233290.1 | 1e-128 | PREDICTED: zinc finger protein 6 | ||||
Swissprot | Q9C9H1 | 9e-56 | GIS3_ARATH; Zinc finger protein GIS3 | ||||
TrEMBL | A0A1J6KXP8 | 1e-127 | A0A1J6KXP8_NICAT; Zinc finger protein 6 | ||||
TrEMBL | A0A1S4BJP9 | 1e-127 | A0A1S4BJP9_TOBAC; zinc finger protein 6 | ||||
STRING | XP_009621927.1 | 1e-128 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2994 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 8e-14 | C2H2 family protein |
Publications ? help Back to Top | |||
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