PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00751g00058.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25869.2 Da    PI: 5.7136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00751g00058.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1958111457
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                               ++++++eq++ Le+ F +++++ +e++ +LA++lgL+  qV vWFqNrRa++k+
  Peaxi162Scf00751g00058.1  58 KRKLSEEQVNLLEQSFVEEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKN 111
                               45899***********************************************95 PP
2HD-ZIP_I/II115.63e-3757148293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+ls+eqv+lLE+sF ee+kLe+erK +la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk+++++   e++rLe+ev +
  Peaxi162Scf00751g00058.1  57 RKRKLSEEQVNLLEQSFVEEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTEHETNIVEKCRLETEVLK 141
                               8************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelke 93 
                               L+e+l+e
  Peaxi162Scf00751g00058.1 142 LKEQLSE 148
                               ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.60152112IPR001356Homeobox domain
SMARTSM003891.6E-1755116IPR001356Homeobox domain
CDDcd000861.03E-1557113No hitNo description
PfamPF000462.4E-1658111IPR001356Homeobox domain
SuperFamilySSF466894.71E-1858120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2059119IPR009057Homeodomain-like
PRINTSPR000311.7E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.7E-592108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTSSMTHHEV NDPMMLISQY YPDIYNQLVP EQGELKPRRR RKKNKGESSS SGVAFMRKRK  60
LSEEQVNLLE QSFVEEHKLE TERKDKLASE LGLDPHQVAV WFQNRRARWK NKKLEEEYSK  120
LKTEHETNIV EKCRLETEVL KLKEQLSEAE NEKQRLLLER CDGVSSINSP TTSSFSMEAN  180
CMEPHFYGEF GIDGTLDNNV FFIAERTYSQ ELLEWANLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14059RKKNKGESSSSGVAFMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605338.11e-100PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU702e-70ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A1S4DI661e-97A0A1S4DI66_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009605338.12e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-69homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]