PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00744g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 508aa MW: 57289.9 Da PI: 4.1811 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 71 | 129 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr+ +++ + + kr +lg+f ta eAa a+++a+k+++g+ Peaxi162Scf00744g00036.1 71 IYRGVRQRT-WGKWVAEIREpVYISNeyrSNgKRLWLGTFSTAVEAALAYDEAAKAMYGH 129 69****999.**********666655595449*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-14 | 70 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.96E-30 | 70 | 137 | No hit | No description |
PROSITE profile | PS51032 | 22.379 | 71 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-33 | 71 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-20 | 71 | 137 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 72 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MESCENRKLK RRRNGSASIE ETLSMWKNNM IEFNATLDDG MKKRRRKFPP NKGSKKGCMR 60 GKGGPENLEC IYRGVRQRTW GKWVAEIREP VYISNEYRSN GKRLWLGTFS TAVEAALAYD 120 EAAKAMYGHD AILNFPDYYV QNVAELANDS SNASITRTTS MESSESSIED VKIEIEHALE 180 ASSTADDGVV AIADEKTLVD ETNLCHVGRA EESETCTQHE CPVVKHDSSA CCLNRESEEI 240 AAEDSVNNVK GDKCSSRIDS EPTSSSDKVD TSSENNIVQD RSLETLCDSN KLHHEITDLK 300 TNDSTFDKDV LTPNEDYDTG DQILFPCDSI TRQDYDCSMN TLQEQPLDFR SSENMNADIG 360 SLQFMEYLLM EDNSTMEAMN ISDTFCLNDN IDERYSLQSF LESFDVEGVM DPRGSIEANT 420 LNNELSSDCY TYNQQINLLN PEVNAAVHSD GVMSKEDESK EQYINIFGHE DRGTGEEKPW 480 DPSNSLVSME ELYILNPDFD IKSFLDDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-19 | 72 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-19 | 72 | 136 | 6 | 63 | ATERF1 |
3gcc_A | 4e-19 | 72 | 136 | 6 | 63 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | NRKLKRRR |
2 | 41 | 46 | KKRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248910.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2B-like | ||||
TrEMBL | A0A1J6I9X9 | 0.0 | A0A1J6I9X9_NICAT; Dehydration-responsive element-binding protein 2a | ||||
STRING | XP_009768300.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7965 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 4e-33 | ERF family protein |