PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00714g00620.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ERF

Protein Properties

Length: 269aa MW: 28678.1 Da PI: 5.2868

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00714g00620.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.8	4.3e-16	103	151	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Peaxi162Scf00714g00620.1 103 VFRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 151 589996..678*******843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.3E-25	103	159	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.941	103	159	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-27	103	167	IPR001471	AP2/ERF domain
CDD	cd00018	1.57E-15	104	159	No hit	No description
SuperFamily	SSF54171	1.96E-17	104	160	IPR016177	DNA-binding domain
Pfam	PF00847	2.8E-9	105	151	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MADPVHDLTK SSQPPQPSEQ SSITPFNCPI PAPLPPPLLR THIQTTTVAH PTHHEGEISP 60 RPLSNIIGSP RTVQLPNIPI ATTMSSTSSG GSPSRPTGGK HHVFRGIRSR SGKWVSEIRE 120 PRKTTRIWLG TYPTPEMAAA AYDVAALALK GNDAVINFPG NLSSYPSLPP SPSAADIRKA 180 AATAAALMKP ETGETTVGTQ LGTDDQSSAR SDAQMMTTGD EYIDEEALFD MPNLLVDMAE 240 AMMVSPPRMN SQPSDDSPGN SDAESLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-14	94	159	5	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764333.1	7e-88	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	3e-50	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1U7VDB4	2e-86	A0A1U7VDB4_NICSY; ethylene-responsive transcription factor ERF027-like
STRING	XP_009764333.1	3e-87	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA553	22	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	2e-40	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]