PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00714g00058.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 679aa    MW: 75702.2 Da    PI: 6.086
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00714g00058.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.39.9e-1302976631373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++c ea+ s++ + +++l+arl elasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ ++l+l++
  Peaxi162Scf00714g00058.1 297 LISLLVSCTEAIGSRNVTGVNQLIARLGELASPRGSPISRLTAYFTEALALRVARLWPHIFHIVPPRDLD-RLDDDSSTSLRLLN 380
                               5799****************************************************************98.56777788999*** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               +vsPi+kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe
  Peaxi162Scf00714g00058.1 381 QVSPIPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLIETGDRLAEFAE 461
                               ****************************************************************....9**************** PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                               +l++ fef++ v++rled++l++L+vk+gE++aVn+vlq+h+ll +s       +++L l++s++P+++ ++eqea+hn++s+ +
  Peaxi162Scf00714g00058.1 462 ALNLVFEFHP-VVDRLEDVRLWMLHVKEGESVAVNCVLQMHKLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEA 543
                               **********.7*******************************966655444..79***************************** PP

                      GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                               r++++l+yy+a+fds+  +lp +s  r kvE++ ++rei+n++aceg++r+erhe ++kWr+ +e+ GF+   ++e++  q ++l
  Peaxi162Scf00714g00058.1 544 RLVNSLRYYAAVFDSIGFSLPLDSPVRFKVEEM-FAREIRNIIACEGRDRIERHECFGKWRKLMEQGGFRCTGVTERELLQSQML 627
                               *********************************.*************************************************** PP

                      GRAS 341 lrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                               l++++ + yr+    +++++l+l W d+pL++vSaW
  Peaxi162Scf00714g00058.1 628 LKMYSCEDYRITkqgNDDAALTLRWLDQPLYTVSAW 663
                               *****888***94445589999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.772271641IPR005202Transcription factor GRAS
PfamPF035143.4E-127297663IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MLAGCSSTLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDASR SQSVRPVGLS  60
VEKPNEGKNS GCSLKQNIRL PPSPTVAQTS SYVEGRRESK DDFWEKGRSL KRYAEEESFD  120
DEACMSRAKR KKGNRKSGDC SEEGYGLSLG QLGGGNFWLQ SGFNVSRSVP IIAGLHQHQE  180
APFSFSCSGE EDSVCYVPSE VISPPPPLSN NPWIESIVSE ITNFGDKNVS TSQDPGKEAS  240
VSSASLDSHG LVRRINENPG EHEIGNGSRP PNPNDRAEVV AARNEHNNHR EDDAAELISL  300
LVSCTEAIGS RNVTGVNQLI ARLGELASPR GSPISRLTAY FTEALALRVA RLWPHIFHIV  360
PPRDLDRLDD DSSTSLRLLN QVSPIPKFIH FTSNEILLRA FEGKDRVHII DFDIKQGLQW  420
PSLFQSLASR PNPPTHVRIT GIGESKQDLI ETGDRLAEFA EALNLVFEFH PVVDRLEDVR  480
LWMLHVKEGE SVAVNCVLQM HKLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS  540
LEARLVNSLR YYAAVFDSIG FSLPLDSPVR FKVEEMFARE IRNIIACEGR DRIERHECFG  600
KWRKLMEQGG FRCTGVTERE LLQSQMLLKM YSCEDYRITK QGNDDAALTL RWLDQPLYTV  660
SAWAPLDAAG SSSSFYQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-7230466525379Protein SCARECROW
5b3h_D8e-7230466525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092790.0AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence.
GenBankAP0102630.0AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358871.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM0ZTN80.0M0ZTN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000078790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein