PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00710g00529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | YABBY | ||||||||
Protein Properties | Length: 206aa MW: 23353.8 Da PI: 8.2656 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 25.4 | 4.4e-08 | 6 | 30 | 2 | 26 |
YABBY 2 dvfssseqvCyvqCnfCntilavsv 26 ++f+ + +CyvqC++C+til+v + Peaxi162Scf00710g00529.1 6 HLFELQDTICYVQCGYCTTILLVKL 30 789999****************986 PP | |||||||
2 | YABBY | 156.5 | 2.2e-48 | 52 | 190 | 23 | 165 |
YABBY 23 avsvPstslf.kvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 vsvP +sl k+vtvrCGhCtsllsvnl+kas +l a+ ++ + + + +v++e+++ +++s+ s+ss++ s Peaxi162Scf00710g00529.1 52 KVSVPCSSLCnKIVTVRCGHCTSLLSVNLMKASlvplHLFASLNQ-------TEHPKPEVDKEETE---DNKKSTADSKSSFMTS 126 59******97369*****************998433333333333.......22222222222222...2233334444444555 PP YABBY 103 enedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++e++++ +v p v++PPekrqr+Psayn+fik+ei+r+k+ P+++h++afs+aaknWahfP+ Peaxi162Scf00710g00529.1 127 SDEEDQLENVLPvVNKPPEKRQRAPSAYNCFIKDEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 190 55555555555549************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.7E-49 | 52 | 190 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.27E-8 | 138 | 192 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.7E-4 | 142 | 192 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSTLNHLFEL QDTICYVQCG YCTTILLVKL HTYLSSSAAC ILSYFNYFLF HKVSVPCSSL 60 CNKIVTVRCG HCTSLLSVNL MKASLVPLHL FASLNQTEHP KPEVDKEETE DNKKSTADSK 120 SSFMTSSDEE DQLENVLPVV NKPPEKRQRA PSAYNCFIKD EIKRLKTIYP NMTHKQAFST 180 AAKNWAHFPP SQHRESCSLG DRKMPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621066.1 | 1e-108 | PREDICTED: axial regulator YABBY 4 isoform X1 | ||||
Refseq | XP_016511953.1 | 1e-108 | PREDICTED: axial regulator YABBY 4-like isoform X1 | ||||
Refseq | XP_019228973.1 | 1e-108 | PREDICTED: axial regulator YABBY 4 isoform X3 | ||||
Swissprot | Q9LDT3 | 5e-56 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A1S4DF36 | 1e-106 | A0A1S4DF36_TOBAC; axial regulator YABBY 4-like isoform X1 | ||||
STRING | XP_009621066.1 | 1e-107 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-58 | YABBY family protein |
Publications ? help Back to Top | |||
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