PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00691g00048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 1165aa MW: 131594 Da PI: 5.7217 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 267.4 | 4.8e-82 | 213 | 555 | 1 | 347 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.. 83 lv+lLl++Ae v ++++++ ++l++r +as +g+p+qRl +yf++AL++r+ r + + ++ + ++ + +++ ++ +++ Peaxi162Scf00691g00048.1 213 LVHLLLAAAEEVGKQQFHQGSKLISRCMWTASDSGNPVQRLSFYFAKALQERIDRATGRYTNTDEDRHLKY--VKTMASGTNTef 295 68*****************************************************3333333333333332..222222222254 PP GRAS 84 ..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerL 165 +++ P+ ++ +++ q+I e v +++++H iD++i G+QW L+qaLa+ ++ l+iT+vgs ++ke+ e+tg+ L Peaxi162Scf00691g00048.1 296 ftCHQLLPFSQVMQFAGVQTIIENVRSAKKIHLIDLNIRSGIQWTVLMQALAETGdSPIELLKITAVGS---TEKEKFEATGNTL 377 446799**********************************************876355569********...58*********** PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++fA++lg+pf+f+++ ++++d++ e+ +vk +E++aV + l ++ +++ sl++ ++++v+s+ P+vvvv e ea+hns Peaxi162Scf00691g00048.1 378 HSFARSLGLPFSFDIVFLSDMKDFKQESVEVKADETVAVYCNCVLRTMISKPESLDN----LMRVVRSIGPTVVVVGEVEANHNS 458 *************************************************88888888....************************ PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335 +sFl+rf+e+l +ysa+fd++e + +s r+++E ++g+ i+n+va+eg++r+ r +le Wr+ + ++G+ + +lse+ Peaxi162Scf00691g00048.1 459 PSFLNRFIETLFFYSAFFDCFEDCMDGDSPCRTTIEGLYFGEGIRNIVAAEGKDRFTRSVKLEVWRAFFPRFGMVEEELSESSWY 543 ************************************************************************************* PP GRAS 336 qaklllrkvksd 347 qa+l+l+++++d Peaxi162Scf00691g00048.1 544 QANLILKQFAQD 555 ********9965 PP | |||||||
2 | GRAS | 305.1 | 1.7e-93 | 796 | 1163 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaal 81 lv+ Ll++Ae vs+++ +a++lL++ + las++g+p+qR+++yf+eAL +r+ r e+ + +p s +++ s+ aa+ Peaxi162Scf00691g00048.1 796 LVQILLAAAERVSNQQYDRARKLLSQCQALASNAGNPVQRAVFYFAEALGERIDR---ETGRLMPNSCSDKGIciASRFDAAF 875 6899***************************************************...5555555554443335466666777 PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetge 163 ++++ +P+ ++ h+t qaIle+v+++ +vH iDf i G+QW++L+qa a+R+ ++ +++iT+++s ++ke++ etg+ Peaxi162Scf00691g00048.1 876 VAWHQEFPFTQVVHFTGIQAILESVATKPKVHLIDFLIRTGVQWASLIQAAAERKdNPIEHMKITVIES---VDKERVAETGK 955 77****************************************************955566*********...79********* PP GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246 L++fA++l+ pf+f+++ + ++l++++L++kp+Ea++V+ ++ l + e+ le+ +++vk+l+P ++vv+e ea Peaxi162Scf00691g00048.1 956 SLTSFAKSLNFPFSFKIVFLPDKNQLTVNHLDIKPDEAIVVQAAFFLRAMICEPDVLEN----AMRVVKRLQPSLMVVSEVEA 1034 *****************9999******************************89888888....******************** PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 ++ns+ F++rf+++l yysa+fd+le + r++++r+++E + ++ i+n+v eg+er+ r +l Wr+ + ++G+k+v+l Peaxi162Scf00691g00048.1 1035 NLNSPLFVNRFIDSLFYYSAFFDCLEDVMKRDNQNRMTLESVPYKEGIRNIVGSEGKERVSRSVNLDVWRSFFARFGMKEVKL 1117 *********************************************************************************** PP GRAS 330 sekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 se+ qa+l+++++ ++ + + + gsl Wk+ p++svSaW+ Peaxi162Scf00691g00048.1 1118 SETCLYQANLIIQQFTcKNSCSADVNGGSLAVSWKNTPIYSVSAWK 1163 ****************999999999********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.224 | 187 | 562 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-79 | 213 | 555 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 46.427 | 770 | 1142 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-91 | 796 | 1163 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1165 aa Download sequence Send to blast |
MDNVSISNDN LTDFQGVHFH PKGDERSELV ISGVEDPWLE LEDCEDIDSL YSMCDLSNQE 60 NTSNEQVRTN LLERLQQSIS DRPQSHFPTN TVMPLQPVQI QSTVEAPKHD EVPETGNSSS 120 EKPNPFSSAS LELLNNYGRL IKKSSVENLS NALSYKTCVG KSHKLSMEEI LIAAGERYIQ 180 YSTQRLDGLS MFIHPYGSAL SGLSMEETRD MELVHLLLAA AEEVGKQQFH QGSKLISRCM 240 WTASDSGNPV QRLSFYFAKA LQERIDRATG RYTNTDEDRH LKYVKTMASG TNTEFFTCHQ 300 LLPFSQVMQF AGVQTIIENV RSAKKIHLID LNIRSGIQWT VLMQALAETG DSPIELLKIT 360 AVGSTEKEKF EATGNTLHSF ARSLGLPFSF DIVFLSDMKD FKQESVEVKA DETVAVYCNC 420 VLRTMISKPE SLDNLMRVVR SIGPTVVVVG EVEANHNSPS FLNRFIETLF FYSAFFDCFE 480 DCMDGDSPCR TTIEGLYFGE GIRNIVAAEG KDRFTRSVKL EVWRAFFPRF GMVEEELSES 540 SWYQANLILK QFAQDCTTNR LDSVGGSSHT KNERTGLIYL IFIPLSAIHV QIRRCLQITL 600 SSDMANPLFH LASFTSDQIS GSDGSLRRCK EDIAKSYDQL SSVLKDSTDI QNFCTNYGFY 660 QEYAVNPQVQ EMNKQQEEMN VYASHSAGQL TQEKMKLHGL ETGKDMEKAP FLSLAPFELL 720 RNHPSRCKYI EGDKIRNMKD GTNMYQKLSA MQIMRLAGER FIQFSSHKFI NINNLLHPYG 780 SALSDLSPED NQDVELVQIL LAAAERVSNQ QYDRARKLLS QCQALASNAG NPVQRAVFYF 840 AEALGERIDR ETGRLMPNSC SDKGICIASR FDAAFVAWHQ EFPFTQVVHF TGIQAILESV 900 ATKPKVHLID FLIRTGVQWA SLIQAAAERK DNPIEHMKIT VIESVDKERV AETGKSLTSF 960 AKSLNFPFSF KIVFLPDKNQ LTVNHLDIKP DEAIVVQAAF FLRAMICEPD VLENAMRVVK 1020 RLQPSLMVVS EVEANLNSPL FVNRFIDSLF YYSAFFDCLE DVMKRDNQNR MTLESVPYKE 1080 GIRNIVGSEG KERVSRSVNL DVWRSFFARF GMKEVKLSET CLYQANLIIQ QFTCKNSCSA 1140 DVNGGSLAVS WKNTPIYSVS AWKFH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-47 | 243 | 1163 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016493163.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4BWE8 | 0.0 | A0A1S4BWE8_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009797878.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66350.1 | 9e-55 | RGA-like 1 |