PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00689g00121.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 380aa MW: 43675.2 Da PI: 6.7174 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 9.4e-11 | 173 | 210 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +g WT eEd +l+++v+++G + W+ Ia+++ gR +kq Peaxi162Scf00689g00121.1 173 KGQWTIEEDRILIHLVEKFGIRKWSQIAQMLK-GRIGKQ 210 799****************************9.**9997 PP | |||||||
2 | Myb_DNA-binding | 31.5 | 4.2e-10 | 212 | 239 | 16 | 45 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwq 45 +++ G++ W+ Ia++++ gRt++++k++w+ Peaxi162Scf00689g00121.1 212 HAEVGNK-WAEIAKRLP-GRTENSIKNHWN 239 7889***.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.302 | 168 | 227 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-13 | 168 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-13 | 172 | 244 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-9 | 173 | 210 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.1E-18 | 173 | 243 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-10 | 176 | 242 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-12 | 211 | 240 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-8 | 212 | 239 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MDDDFSINSK NYLQDFEHLD LNFSIPTFNN PDHNFMIETN SYDPFDPFSN IEDDLGDFNF 60 CYERKPFEEN IGASSSIVVN NIHGADEFSI NKENFMDVNM YNEKSFSSVC CEDVKPLNFV 120 VPDESSSCVT ADINGSCKEI GGRKSKKMKR NDNNLSSSMK KPSRGRKKSK SAKGQWTIEE 180 DRILIHLVEK FGIRKWSQIA QMLKGRIGKQ SHAEVGNKWA EIAKRLPGRT ENSIKNHWNA 240 TKRRQFSRRK CRTKWPRPSS LLQNYIKSLN LEKGSSKKNF HDTNPNAKVM KVSTKLEPVD 300 NFCQGNSIEQ VHDYGFSEVQ EFALDDKLFD DIPIGPSNMD DNIEKFMGLE MIPYELSTLV 360 QGEVNKEIDL MEMISRVNKP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-22 | 173 | 245 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-22 | 173 | 245 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC219210 | 3e-71 | AC219210.1 Solanum lycopersicum chromosome 6 clone C06HBa0082B05, complete sequence. | |||
GenBank | AC232944 | 3e-71 | AC232944.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 6 clone LE_HBa-24A16, complete sequence. | |||
GenBank | HG975518 | 3e-71 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603629.1 | 1e-160 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A1J6IMW2 | 1e-149 | A0A1J6IMW2_NICAT; Transcription factor myb98 | ||||
STRING | XP_009603629.1 | 1e-159 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-50 | myb domain protein 98 |