PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00689g00005.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 231aa MW: 25751.4 Da PI: 6.4053

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00689g00005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.6	6.1e-45	65	163	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear+rdPvyG+vg i+ lq+ Peaxi162Scf00689g00005.1 65 PCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVSSLAYEAEARVRDPVYGCVGAITFLQR 149 7********************************************************************************** PP DUF260 86 qleqlkaelallke 99 q+e+l++el+++++ Peaxi162Scf00689g00005.1 150 QVERLQKELDSANA 163 *******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.72	64	165	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-43	65	162	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MIVMDFMAAH SAVLHIALLT QCISSLCGVE LDSVLLLHFM ENYQEPCSGL DERKLMASSS 60 CYNSPCAACK FLRRKCLPDC IFAPYFPPEE PQKFANVHKI FGASNVTKLL NELLPHQRED 120 AVSSLAYEAE ARVRDPVYGC VGAITFLQRQ VERLQKELDS ANADLIRYAS CNDVPTPFIG 180 PQEMGSSLHN MALSRRMGHD GGGFHQPHNF PFPYPPSWND QNPYGRGGNN I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-64	63	169	9	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-64	63	169	9	115	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778337.1	1e-100	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_009778338.1	1e-100	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_016510977.1	1e-100	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_019248966.1	1e-100	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	1e-68	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1J6IB20	5e-99	A0A1J6IB20_NICAT; Protein lateral organ boundaries
TrEMBL	A0A1S4DC18	5e-99	A0A1S4DC18_TOBAC; protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A1U7WEE4	5e-99	A0A1U7WEE4_NICSY; protein LATERAL ORGAN BOUNDARIES-like
STRING	XP_009778337.1	1e-100	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	5e-71	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]