PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00683g00242.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 910aa    MW: 103297 Da    PI: 8.7781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00683g00242.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07353395446
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               W t E++ l++av+q  + +W  Ia+ +g  Rt+ qc s++q 
  Peaxi162Scf00683g00242.1 353 WDTVEEKSLLHAVQQKEMSDWIGIAASLGVCRTPFQCLSHYQR 395
                               *****************************99**********96 PP
2Myb_DNA-binding43.38.4e-14403447146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r  WT+eEd +l  +v+ +G  +W  +a+ m  gRt+ qc +rw k
  Peaxi162Scf00683g00242.1 403 RRDWTEEEDIRLCSLVETFGESNWQVVASFME-GRTGTQCSNRWIK 447
                               568*****************************.***********87 PP
3Myb_DNA-binding38.82.1e-12457514246
                               SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                               g+W+++Ed++l+ av ++ ++               Wk+Ia+ ++ gRt  qc++rw +
  Peaxi162Scf00683g00242.1 457 GKWSADEDKRLKVAVMLFYPKtwrnigqsvpwrtpIWKKIAQFVP-GRTHVQCRERWVN 514
                               89*****************99************************.***********87 PP
4Myb_DNA-binding47.54.1e-15524566347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                WT+eEd++l+ a+ ++G   W+++a++++  Rt++qc+ rw  +
  Peaxi162Scf00683g00242.1 524 EWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWMVL 566
                               7*****************99.*********.9**********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.2260346IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-8327397IPR009057Homeodomain-like
PROSITE profilePS500906.562345397IPR017877Myb-like domain
SMARTSM007170.077349399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-9353405IPR009057Homeodomain-like
SuperFamilySSF466892.44E-19381452IPR009057Homeodomain-like
PROSITE profilePS5129419.552398453IPR017930Myb domain
SMARTSM007175.1E-13402451IPR001005SANT/Myb domain
PfamPF002491.5E-12403447IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-16406455IPR009057Homeodomain-like
CDDcd001673.89E-10406449No hitNo description
SuperFamilySSF466891.39E-7440492IPR009057Homeodomain-like
PROSITE profilePS500908.931451516IPR017877Myb-like domain
SMARTSM007175.9E-10455518IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-13456505IPR009057Homeodomain-like
PfamPF002499.6E-6457491IPR001005SANT/Myb domain
CDDcd001678.06E-7458516No hitNo description
SuperFamilySSF466895.31E-25496568IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-20506563IPR009057Homeodomain-like
PROSITE profilePS5129422.515517571IPR017930Myb domain
SMARTSM007174.8E-14521569IPR001005SANT/Myb domain
PfamPF002494.4E-14524565IPR001005SANT/Myb domain
CDDcd001671.57E-11524567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MDMNGATYIS VRFLMGFEWV GSDADDDIEL VRSIQERFAL STELREPLSL KPLYSIHPRG  60
GSEFDDDDDD GDDFETLRAI QRRFAAYTDE RTNPEEGFPA CVDRTTHFSE GCSYDIAARS  120
QTLIEWHDDD SGAENTAVSA NSSSFPKSAQ AFVDAIKKNR SCQKMIRNKM MQVEARMEEL  180
KKLKERVKIL KSFQLTCRKR MGRALSQKRD ARVQLISLPK QRFSSKLQGK KLSAIHYGPP  240
ENSHVASFKE ALTEFAVSLS RKEWSKEERE KLAKGVKQQF QEMLLQHSVN LRSDQDGCSG  300
ESGDLDDTIA SIRDLVNKIA PETMRLFLPK VNWDQVASMW LNWEDPLIKH EGWDTVEEKS  360
LLHAVQQKEM SDWIGIAASL GVCRTPFQCL SHYQRSLNAS IIRRDWTEEE DIRLCSLVET  420
FGESNWQVVA SFMEGRTGTQ CSNRWIKSLH PARKRSGKWS ADEDKRLKVA VMLFYPKTWR  480
NIGQSVPWRT PIWKKIAQFV PGRTHVQCRE RWVNSLDPSL KLDEWTEEED LKLKSAIDEH  540
GYSWSKVAAC VPPRTDNQCR RRWMVLFPDE VPMLQEAKKI HREAFISNFV DREEQRPALK  600
PDDLVPTHKL RDKAGCETTS ANKKRKRRPR AGREDTTPRS DAICELEKQH SDGEEGFEQD  660
FHDASKNRRP SKLRVRKTQN FAPNDNVPDA SASSQVESII GDGNKCKRRK RTHLLMKKKA  720
KNAALQESSS SFPNQSSSMT AAEEADIRDS RKTNNIMDGR HSIRECDNQL KAIDNRPETT  780
EDCTTLASFI SKSRAKGRLL SSAKVVKHPE LGQSKTMADA DNNSSCTTLA SFISKSHAKR  840
RSSSSAKVVK HPELGQSKTM ADNTSSSISG HDGLGKTMTE DCTSSNGVVG AEVGDDMPLS  900
LFMSRAKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-283535639155MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-283535639155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1622627KKRKRR
2706712KRRKRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389744e-63AC238974.1 Solanum tuberosum clone RHPOTKEY152M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482191.10.0PREDICTED: uncharacterized protein LOC107803091 isoform X1
TrEMBLA0A1S4B0420.0A0A1S4B042_TOBAC; uncharacterized protein LOC107803091 isoform X1
STRINGXP_009770188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-152myb domain protein 4r1