PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00682g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 313aa    MW: 35488.8 Da    PI: 8.3039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00682g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl
  Peaxi162Scf00682g00009.1 14 RGPWSPEEDAKLKDFIHKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                              89*********************************************97 PP

2Myb_DNA-binding383.7e-1269111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00682g00009.1  69 GDFSDEEDRIICSLYSTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               679******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.358962IPR017930Myb domain
SuperFamilySSF466892.0E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002499.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-241569IPR009057Homeodomain-like
CDDcd001676.04E-101662No hitNo description
PROSITE profilePS5129422.16563117IPR017930Myb domain
SMARTSM007177.8E-1267115IPR001005SANT/Myb domain
PfamPF002496.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2370117IPR009057Homeodomain-like
CDDcd001672.29E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRIIC SLYSTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
IPSSIIQRKS PYMFPPTTLH ATQVQPNNLY TPNLSYTNNN MNFPLGATNH QYSYNFQSHH  180
QDSLINPMQI YPQLKDNLLM FGGTTEASCS SSDGSCSQLS FGHKEIKKED IIMGNFSHGQ  240
ISSVAFEENQ NFMSWVDQKP NGYFGNNNNQ SADQVLLQYD LDQEVKQQQL TSCSNGNNGT  300
TTSECNNNSM FYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4965861e-109JF496586.1 Capsicum annuum BLIND (BLIND) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600706.11e-135PREDICTED: transcription factor RAX2-like
RefseqXP_016497782.11e-135PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4C9641e-133A0A1S4C964_TOBAC; transcription factor RAX2-like
STRINGXP_009600706.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-79myb domain protein 36