PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00681g00435.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 266aa    MW: 28809 Da    PI: 8.1851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00681g00435.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.6e-101055346
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                               W+ e d  + +a + ++ g   +W+ Ia+ ++ g+tl ++k+++  
  Peaxi162Scf00681g00435.1 10 VWSREQDIAFENALATYPEGsadRWENIAADVP-GKTLVEVKNHYEL 55
                              7********************************.***********75 PP
2Myb_DNA-binding445e-14121165347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Peaxi162Scf00681g00435.1 121 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                               6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.571161IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-6658IPR009057Homeodomain-like
SMARTSM007174.6E-9759IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-11965IPR009057Homeodomain-like
PfamPF002492.0E-71054IPR001005SANT/Myb domain
CDDcd001677.09E-91157No hitNo description
PROSITE profilePS5129417.201114170IPR017930Myb domain
SuperFamilySSF466897.49E-17116171IPR009057Homeodomain-like
SMARTSM007174.5E-11118168IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-17118168IPR006447Myb domain, plants
CDDcd001678.84E-11121166No hitNo description
Gene3DG3DSA:1.10.10.604.4E-11121164IPR009057Homeodomain-like
PfamPF002496.2E-12121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTVAKSRSSV WSREQDIAFE NALATYPEGS ADRWENIAAD VPGKTLVEVK NHYELLLDDV  60
SRIESGYVPL PCYNCSFDSS FSYSGGERTG KKTGISGSLN SESNDGGKST RSEQERRKGI  120
AWTEDEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVNDG DVSVPQVPIT GQTIGAGAGG SSGKSDKRSP TAPNGPLGVG IYGATTIGQP  240
VTEPFVSAFG TPVSLSAPTY MPYGIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1611761176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572400.11e-149PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-103SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2G3CEY51e-153A0A2G3CEY5_CAPCH; Transcription factor DIVARICATA
STRINGPGSC0003DMT4000651021e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-99MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]