PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00658g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 27774.6 Da PI: 8.6587 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw++yl Peaxi162Scf00658g00110.1 19 KGAWTEEEDVLLRKCIEKFGEGKWHQVPVRAGLNRCRKSCRLRWLNYL 66 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.857 | 14 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 17 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-21 | 20 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.54E-10 | 21 | 66 | No hit | No description |
PROSITE profile | PS50090 | 4.124 | 67 | 109 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 70 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 18 | 71 | 182 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
CDPHIMNTTI PKSSGLVRKG AWTEEEDVLL RKCIEKFGEG KWHQVPVRAG LNRCRKSCRL 60 RWLNYLRPHI KRGDFSPDEV DLILRLHKLL GNRQRKLIAP PRQEIRKCRA LKITENNIVR 120 PRPRTFSNNA QNISWCSNKS ITNSTIDKDG SNNECIRISD KKPMAEVSRD DGVRWWTSLL 180 ANCNENDETA VENMSYDKLP SLLHEEISPT INGGISNCMQ EGKTGWDDFS VDIDHLWNLL 240 N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ428100 | 0.0 | HQ428100.1 Petunia x hybrida cultivar Mitchell PURPLE HAZE gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256541.1 | 1e-101 | PREDICTED: transcription factor MYB113-like | ||||
TrEMBL | E9LNZ7 | 1e-159 | E9LNZ7_PETHY; R2R3 MYB anthocyanin regulator | ||||
STRING | XP_009626596.1 | 7e-95 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-41 | myb domain protein 113 |