PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00654g00024.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 864aa    MW: 95282.2 Da    PI: 6.1803
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00654g00024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-191876357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Peaxi162Scf00654g00024.1 18 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                              5678*****************************************************97 PP
2START179.12.5e-561633712205
                               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEEC CS
                     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevis 86 
                               laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l+v s
  Peaxi162Scf00654g00024.1 163 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLDPT-RVSEILKDRPSWFRDCRTVDVLNVMS 246
                               7899******************************************************.9999999999**************** PP

                               TT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
                     START  87 sg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                               +g  g+++l +++l+a+++l+p Rdf+  Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s ++
  Peaxi162Scf00654g00024.1 247 TGngGTIELLYMQLYAPTTLAPgRDFWLMRYTSVMEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIH 331
                               *****************************************************9988899************************* PP

                               EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                     START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                               +v+h+dl+ ++++++lr+l++s+++  ++t++a+l+++++
  Peaxi162Scf00654g00024.1 332 IVDHIDLEPWSVPEVLRPLYESSTVLSQRTTMAALRHLRQ 371
                               ***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6771377IPR001356Homeobox domain
SMARTSM003896.8E-161581IPR001356Homeobox domain
SuperFamilySSF466899.84E-171779IPR009057Homeodomain-like
CDDcd000861.32E-161878No hitNo description
PfamPF000461.7E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182076IPR009057Homeodomain-like
CDDcd146868.67E-670109No hitNo description
PROSITE profilePS5084826.172153381IPR002913START domain
CDDcd088756.45E-79157372No hitNo description
SMARTSM002347.5E-40162372IPR002913START domain
SuperFamilySSF559611.37E-37163373No hitNo description
Gene3DG3DSA:3.30.530.201.3E-22163368IPR023393START-like domain
PfamPF018521.4E-53163371IPR002913START domain
PfamPF086701.2E-50721863IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MAVTSTYKDS KLAMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQGVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ  120
QTQNAALATT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLDPT RVSEILKDRP SWFRDCRTVD  240
VLNVMSTGNG GTIELLYMQL YAPTTLAPGR DFWLMRYTSV MEDGSLVVCE RSLNNTQNGP  300
SMPPVQNFVR AEMLPSGYLI RPCEGGGSII HIVDHIDLEP WSVPEVLRPL YESSTVLSQR  360
TTMAALRHLR QISQEISQPT VSGWGRRPAA LRALSQRLSK GFNEAVNGFT DEGWSLLESD  420
GIDDVTILVN SAPSKLMGAS LSYANGFPSM SSAVLCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADSGIDAY SAAAVKAGPC SIPVTRTGSF GGQVILPLAH TIEHEEARDL FRMICTILLE  540
ILILFFAFAK FMEVIRLESI GHYQEDMIMP GDIFLLQLCS GVDENAVGTC SELIFAPIDA  600
SFADDAPLLP SGFRIIPLDS KSDSSSPNRT LDLASTLEVG PAGNRLSGDY SKKSGSTKSV  660
MTIAFQFAFE IHLQENIAAM ARQYVRSIIS SVQRVALALS PSHLGSVPGL RSPPGTPEAQ  720
TLARWICQSY RFFLGTELLK SVSGGSESIL KELWNHSDAL MCCSLKALPV FTFANEAGLD  780
MLETTLVALQ DITLEKIFDD NGRKTLFSEL PQITQQGFAC LQGGICLSSM GRPISYERAV  840
AWKVLNDEEN PHCICFMFIN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537761.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A3Q7HQY20.0A0A3Q7HQY2_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000749340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]