PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00648g00119.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 483aa    MW: 54073.8 Da    PI: 5.0412
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00648g00119.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-1772122155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr +  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +++g
  Peaxi162Scf00648g00119.1  72 PVYRGVRKRN-SGKWVCEVREP---NKQSRIWLGTFPTAEMAARAHDVAAIAFRG 122
                               68*****888.8******9998...336***********************9998 PP
2AP252.99.4e-17327376155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr  k++g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Peaxi162Scf00648g00119.1 327 PVYRGVR--KRNGKWVCEVREP---NKKSRIWLGSFPTAEMAARAHDVAAIALRG 376
                               68****6..779******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1272122IPR001471AP2/ERF domain
SMARTSM003801.8E-3073136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3173132IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2073132IPR016177DNA-binding domain
PROSITE profilePS5103222.77473130IPR001471AP2/ERF domain
CDDcd000183.58E-3174132No hitNo description
PRINTSPR003671.1E-87485IPR001471AP2/ERF domain
PRINTSPR003671.1E-896112IPR001471AP2/ERF domain
PfamPF008473.4E-11327376IPR001471AP2/ERF domain
PROSITE profilePS5103220.468328384IPR001471AP2/ERF domain
SMARTSM003801.0E-27328390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-29328386IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18328386IPR016177DNA-binding domain
CDDcd000181.40E-29329386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDIFGSYYSD TLPAASAPTF WPLDVPEYSS PISDNSSCSN NRANHSDEEV MLASNNPKKR  60
AGRKKFRETR HPVYRGVRKR NSGKWVCEVR EPNKQSRIWL GTFPTAEMAA RAHDVAAIAF  120
RGRSACLNFA DSAWKLPTPA SSDPKDIQKA AAEAAEAFRP LESEGIHSAG EESKEESTTP  180
ETAESMYFMD EEALFCMPGL LANMAEGLML PPPQCSEVGD HFMEADADMP LWSYSYSLFT  240
FDSNKQKPQT EQHSILVYTF YSLKMDIFGS YYSDILPIEL PEYSSPMSDN SSCSNYRANY  300
SDDEVMLASN NPKKCAGRKK FRETRHPVYR GVRKRNGKWV CEVREPNKKS RIWLGSFPTA  360
EMAARAHDVA AIALRGRSAC LNFADSAWKL PIPASSNPKD IQKAAAEAAK AFRESGEESK  420
EESNTPETPE KMFFMDEEAL FCMPELLANM AEGLMLPPPP QCSDVGEHFM EADVDMPLWS  480
YSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-13711291271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274894.11e-110AP2 domain CBF protein
SwissprotQ9FJ933e-73DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A3S3NKA91e-124A0A3S3NKA9_9MAGN; AP2/ERF domain-containing protein
STRINGPGSC0003DMT4000371221e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2539922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.14e-66C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]