PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00646g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 94aa    MW: 10823.4 Da    PI: 4.244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00646g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.47.8e-3329384179
                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                               f+e +P+lk++++++Nq I ea+e+e++vHi+D+++ ++lQW aLl+ L++ pegp++lRiTg ++    +ke l ++++ L++ 
  Peaxi162Scf00646g00012.1   2 FFEFFPFLKVAFMVTNQVIIEAMEEEKMVHIVDLNAAEPLQWQALLHDLSAHPEGPAHLRITGAHQ----QKEVLDQMAQVLTEE 82 
                               9*****************************************************************....9************** PP

                      GRAS 169 Aeelgvpfefn 179
                               A++l+ pf+fn
  Peaxi162Scf00646g00012.1  83 AANLDFPFQFN 93 
                               **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.491194IPR005202Transcription factor GRAS
PfamPF035142.7E-30293IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MFFEFFPFLK VAFMVTNQVI IEAMEEEKMV HIVDLNAAEP LQWQALLHDL SAHPEGPAHL  60
RITGAHQQKE VLDQMAQVLT EEAANLDFPF QFNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-16192101192Protein SCARECROW
5b3h_A2e-16192100191Protein SCARECROW
5b3h_D2e-16192100191Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-88HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755246e-88HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447393.12e-49PREDICTED: scarecrow-like protein 3
RefseqXP_019236517.12e-49PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR88e-38SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0V0IME12e-48A0A0V0IME1_SOLCH; Putative ovule protein (Fragment)
TrEMBLA0A1J6JZ685e-48A0A1J6JZ68_NICAT; Scarecrow-like protein 3
TrEMBLA0A1S3Y5614e-48A0A1S3Y561_TOBAC; scarecrow-like protein 3
STRINGXP_009761009.12e-48(Nicotiana sylvestris)
STRINGPGSC0003DMT4000118392e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1604136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-40scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]