PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00646g00004.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 539aa    MW: 61057.9 Da    PI: 4.9004
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00646g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS154.59.6e-483805381179
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l+++Ll+cA++++sg+le+a+ +L  +s+laspdgd+mqR+a+y+teALa r++rs+++lyk l++++ s   +se         
  Peaxi162Scf00646g00004.1 380 LIHVLLACANHMASGSLENANIAL-DISHLASPDGDTMQRIASYLTEALADRILRSWPGLYKVLQSTKLS--VVSED-------- 453
                               689*****************9998.69***********************************99988887..24444........ PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                                    + ++++++NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTg ++    +ke l ++++ L++ A+
  Peaxi162Scf00646g00004.1 454 -----ILVAFMVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQNLSARPEGPPHLRITGAHQ----QKEVLDHMAHVLTEEAA 529
                               .....44689******************************************************....9**************** PP

                      GRAS 171 elgvpfefn 179
                               +l+ pf+fn
  Peaxi162Scf00646g00004.1 530 NLDFPFQFN 538
                               ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.57E-10757IPR001810F-box domain
PfamPF006461.5E-6848IPR001810F-box domain
SMARTSM002562.6E-6949IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.6E-6945No hitNo description
TIGRFAMsTIGR016408.3E-32106333IPR017451F-box associated interaction domain
PROSITE profilePS5098526.796354539IPR005202Transcription factor GRAS
PfamPF035143.3E-45380538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MAIFTYAILP RELLISIFCR VPVKFIGQLR CVSKSWLTLL SNQDFLKTHL TKYSQESHEK  60
LILLSENSHS LHTITLTDDD NNYDGFLNSL NNQQLPNDPV VEISGSCNGL VLLVNEDNTK  120
VVMNPTTLKF KKIPNSPVAL PPRMSFSMHG FGYDHVNDDY KVVMISRYDH DNEYEPDILD  180
MFMDVYSLKS GYWRRIKSSP YDHAVPESAS GIYVNGSLHW LASKLEDYSS VIGAFVLSDE  240
EFIEVPAPSS VDKKKFVFNK LGTVGGCLCM LGIPNGNKID FSIMKEYGVE ESWTKYIIDG  300
PPFYDFLKPL CFIRDKEVVL NVDGEKMIVY NLQEEKYRDL KVDGIPDKFE SVVTFVESLL  360
SPNFPEWLKE LKYEERGLYL IHVLLACANH MASGSLENAN IALDISHLAS PDGDTMQRIA  420
SYLTEALADR ILRSWPGLYK VLQSTKLSVV SEDILVAFMV TNQAIIEAME GEKMVHIVDL  480
NAAEPLQWRA LLQNLSARPE GPPHLRITGA HQQKEVLDHM AHVLTEEAAN LDFPFQFNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-263665375192Protein SCARECROW
5b3h_A1e-263665374191Protein SCARECROW
5b3h_D1e-263665374191Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-88HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755242e-88HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349814.11e-176PREDICTED: F-box/kelch-repeat protein At3g06240-like
TrEMBLM1A0J01e-175M1A0J0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000120001e-175(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-78scarecrow-like 3