PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00617g00011.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24802.8 Da    PI: 4.7362
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00617g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-1012381541
                              HHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                    SRF-TF 15 kRrngilKKAeELSvLCdaevaviifs 41
                              +  + + KKA+ELS+LCda+va++if 
  Peaxi162Scf00617g00011.1 12 RKIQSLYKKAQELSTLCDAKVAIVIFK 38
                              4557899******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.914139IPR002100Transcription factor, MADS-box
PfamPF003194.1E-10839IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-13884IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDIVSERALF ARKIQSLYKK AQELSTLCDA KVAIVIFKNG ENTPIVWPSQ AVAEETARTF  60
RNTDEVQKMK KLVKHENYLL EKLQDRADNF RQKTEEIEME LLFNQLVEGK NINELDARQI  120
KGLKKLFDIK KAKVAERKKQ LNEDNEKNED VHPIQDQPDQ PSDQPQPPLP DKNVHEASKC  180
SLEAMAANQD FGLGVESGKS SGPQEAVKDN DAEEENDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685080.0FJ168508.1 Petunia x hybrida type I MADS box transcription factor (MADSy3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB6DT601e-126B6DT60_PETHY; Type I MADS box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.11e-13AGAMOUS-like 92