PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00581g00039.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family CO-like
Protein Properties Length: 413aa    MW: 45339.2 Da    PI: 6.2399
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00581g00039.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.8e-06444539
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                               C+ ++e++   +C+++  +lC +C  + H+       H++
  Peaxi162Scf00581g00039.1  4 LCEFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                              7*****************************65677777765 PP
2zf-B_box26.91e-084688440
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                C+++++++++  C + +  lC++C +++H g      H+++
  Peaxi162Scf00581g00039.1 46 LLCERCNSQPAIVRCVEEKISLCKNCDSNSHAGsgtgslHKRQ 88
                              57*****************************888899999876 PP
3CCT62.61.3e-21356399144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               R +a+lRYkeK+ktR F+K++rY+sRKa+A+ R RvKGrFvk+ 
  Peaxi162Scf00581g00039.1 356 RSNAVLRYKEKKKTRTFDKHVRYASRKARADVRRRVKGRFVKAG 399
                               899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.641147IPR000315B-box-type zinc finger
SMARTSM003361.7E-8147IPR000315B-box-type zinc finger
CDDcd000211.94E-7447No hitNo description
PROSITE profilePS501199.0014390IPR000315B-box-type zinc finger
SMARTSM003361.34890IPR000315B-box-type zinc finger
PfamPF062032.7E-16356398IPR010402CCT domain
PROSITE profilePS5101714.902356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGHLCEFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAIVRC  60
VEEKISLCKN CDSNSHAGSG TGSLHKRQAL SCYTGCPSAA ELSTIWSFIL DGPSGGDSTC  120
EKGMGSMSIT DARPRDSQGP QGTDNNQDVS VTVEASNLHT SQKSTTLMRS SLPNLDQKLN  180
KVESSARSMN ISSSKGCYSG TKGSTLYEDD PFAQDFNMDE VDLSFENYEE LFSGSLDNTN  240
QLFENEDIDG LFGTRAMSVS DNSCQDANAV EGSSIRRVNA IQPAYSNAES VDSMVSCKTE  300
PPIYFARPQS ILSFSNHSGE INTEDYQECG ASTMLLMGEP PWCHPCAESS LASSSRSNAV  360
LRYKEKKKTR TFDKHVRYAS RKARADVRRR VKGRFVKAGE AYDYDPLSKT RSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1891920.0KM189192.1 Petunia x hybrida B-box-type zinc-finger protein (BBX8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353101.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_006353102.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_006353103.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015166684.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015166685.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015166686.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-128COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0H3VG200.0A0A0H3VG20_PETHY; B-box-type zinc-finger protein
STRINGPGSC0003DMT4000136240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-114B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]