PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00578g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25510 Da PI: 8.619 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 14 | 57 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw Peaxi162Scf00578g00007.1 14 KGSWTEEEDILLRKCIEKYGEGKWHQVPVRAGLNRCRKSCRLRW 57 799***************************************** PP | |||||||
2 | Myb_DNA-binding | 26 | 2.2e-08 | 56 | 79 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w++ Peaxi162Scf00578g00007.1 56 RWSLIAGRLP-GRTANDVKNYWNTN 79 4*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.888 | 9 | 65 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 12 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 13 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.16E-16 | 13 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-13 | 14 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-11 | 16 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-10 | 57 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MKTSVFTSSG VLRKGSWTEE EDILLRKCIE KYGEGKWHQV PVRAGLNRCR KSCRLRWSLI 60 AGRLPGRTAN DVKNYWNTNL LTRAKLGPPQ QHDRKCPKAI KTMAKNAIIR PQPWNLSKLA 120 KNNVSTIHKE EHSKQEIIIE KPTTAEVVSR DENVEWWTNL LLDNSNGFEK AATESTSAFQ 180 NIESLLNEEL LSPSINGGTY YPMQETGDMG WSDLSIDADL WELL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ428104 | 0.0 | HQ428104.1 Petunia x hybrida cultivar Mitchell AN4 gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256541.1 | 7e-64 | PREDICTED: transcription factor MYB113-like | ||||
TrEMBL | E9N666 | 1e-150 | E9N666_PETHY; Anthocyanin 4 | ||||
STRING | XP_009626596.1 | 6e-61 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 7e-37 | myb domain protein 113 |