PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00578g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 224aa    MW: 25510 Da    PI: 8.619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00578g00007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151457144
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                              +g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw
  Peaxi162Scf00578g00007.1 14 KGSWTEEEDILLRKCIEKYGEGKWHQVPVRAGLNRCRKSCRLRW 57
                              799***************************************** PP

2Myb_DNA-binding262.2e-0856792347
                              -HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                              +W++Ia +++ gRt++++k++w++ 
  Peaxi162Scf00578g00007.1 56 RWSLIAGRLP-GRTANDVKNYWNTN 79
                              4*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.888965IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-151256IPR009057Homeodomain-like
SMARTSM007171.8E-141382IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-161376IPR009057Homeodomain-like
PfamPF002491.2E-131457IPR001005SANT/Myb domain
CDDcd001672.22E-111680No hitNo description
Gene3DG3DSA:1.10.10.607.3E-105780IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKTSVFTSSG VLRKGSWTEE EDILLRKCIE KYGEGKWHQV PVRAGLNRCR KSCRLRWSLI  60
AGRLPGRTAN DVKNYWNTNL LTRAKLGPPQ QHDRKCPKAI KTMAKNAIIR PQPWNLSKLA  120
KNNVSTIHKE EHSKQEIIIE KPTTAEVVSR DENVEWWTNL LLDNSNGFEK AATESTSAFQ  180
NIESLLNEEL LSPSINGGTY YPMQETGDMG WSDLSIDADL WELL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4281040.0HQ428104.1 Petunia x hybrida cultivar Mitchell AN4 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256541.17e-64PREDICTED: transcription factor MYB113-like
TrEMBLE9N6661e-150E9N666_PETHY; Anthocyanin 4
STRINGXP_009626596.16e-61(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-37myb domain protein 113