PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00576g00063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 60183.8 Da PI: 5.1456 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 423.7 | 1.5e-129 | 173 | 542 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +elLl+cA avs++ ++a++l++ l+e +s +g+pmqRl ay++e+L+arl++s+s +yk+l+++e + sse +++++++++ Peaxi162Scf00576g00063.1 173 KELLLACAGAVSDDAISAAEKLMNVLEEKVSVSGEPMQRLSAYMLEGLRARLYSSGSIIYKKLKCNEPT---SSELFSYMQVLYH 254 689*****************************************************************9...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 ++P+ kf++ aN I ea+ +e+r+H+iDf i qG+QW+ L+q+La Rp+gpp l iTgv++++s + l+ +gerLak+A Peaxi162Scf00576g00063.1 255 ICPYTKFAYTSANVVIEEAMRNENRIHVIDFTIAQGTQWMFLMQSLARRPGGPPFLHITGVDDSQSAhaRGGGLQLVGERLAKVA 339 ***************************************************************9988889999************ PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 e++gvpfef++ +a + d++le+L +++gEalaVn+ + lh+++desvs+e++rd++L+lvkslsPk+v++veqe+++n++ Fl Peaxi162Scf00576g00063.1 340 ESCGVPFEFHA-AALSGCDVQLENLCIRHGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKIVTLVEQESNTNTAAFL 423 ***********.899********************************************************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 rf e+l+yy+a+f+s++a+ p ++++ri+ E+ +++r+ivn++acega+r+erhe ++kW++r+++aGF+p pls ++ + +k Peaxi162Scf00576g00063.1 424 PRFRETLDYYTAMFESIDAGRPGDDKQRISAEENCVARDIVNIIACEGADRVERHELFGKWSMRFMMAGFSPCPLSPSVGEAIKD 508 ************************************************************************************* PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l++++ + +r+ e++g+l+lgWk+r+L ++SaWr Peaxi162Scf00576g00063.1 509 MLKEYSPN-FRLAESNGALYLGWKNRALATTSAWR 542 ******55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.878 | 146 | 523 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-127 | 173 | 542 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MKASQRPQTS GSVHKLYHQP MKKVEQYYSP YHVFNNICND TSSSGTQVSF QTQNEQFFTL 60 DSLPAADYVI YDSTPAVSAS SNWSPFSPQC SQSYISDLHS SENTYGSPLS GCSGVDDGNE 120 LKHVLWEMAN NLLGPESDMD DDSSCSFNDV VSEPSSLTKW NRVLDIASSM DVKELLLACA 180 GAVSDDAISA AEKLMNVLEE KVSVSGEPMQ RLSAYMLEGL RARLYSSGSI IYKKLKCNEP 240 TSSELFSYMQ VLYHICPYTK FAYTSANVVI EEAMRNENRI HVIDFTIAQG TQWMFLMQSL 300 ARRPGGPPFL HITGVDDSQS AHARGGGLQL VGERLAKVAE SCGVPFEFHA AALSGCDVQL 360 ENLCIRHGEA LAVNFPYVLH HMPDESVSTE NHRDRLLRLV KSLSPKIVTL VEQESNTNTA 420 AFLPRFRETL DYYTAMFESI DAGRPGDDKQ RISAEENCVA RDIVNIIACE GADRVERHEL 480 FGKWSMRFMM AGFSPCPLSP SVGEAIKDML KEYSPNFRLA ESNGALYLGW KNRALATTSA 540 WR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-58 | 179 | 541 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-58 | 179 | 541 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554161.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Refseq | XP_016554162.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Refseq | XP_016554163.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A2G3CJ54 | 0.0 | A0A2G3CJ54_CAPCH; Scarecrow-like protein 5 | ||||
STRING | XP_009625296.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | SCARECROW-like 13 |