PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00569g00053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 39910.6 Da PI: 6.3172 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.4 | 2.8e-21 | 169 | 218 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a++k++g Peaxi162Scf00569g00053.1 169 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEGAARAYDEAALKFRG 218 7********.**********76....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.38E-36 | 169 | 228 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-33 | 169 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 169 | 227 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.462 | 169 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-38 | 169 | 232 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-14 | 169 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 170 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 192 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MCIVKVANQR NKANKFINGR RLSGEEREGN DDGEGINVLG STFSGNINRE EEMSVMVSAL 60 TRVVTGEDTI LNSQGAETWH NNVGSSGLSY LSDYFPRGVG EKRGRDEEQS GQQFLSSSGG 120 ESSNIRTIAS NTPTTEATFI YTTPTYDHNT TTDHQPYGGG INDHQAKRRY RGVRQRPWGK 180 WAAEIRDPYK ATRVWLGTFD TAEGAARAYD EAALKFRGSK AKLNFPENVK LILPHDQQQP 240 LPPHITISNN SPNTLYNVSS ITNPIVHTQP YIDTNINPQV FLNDDFQRLQ SSSSLLNQFM 300 YSTTSQYSSS SLSLSLSSSS SEVPFLPSLY NFQDSQPASQ GSGSDFPTTS SDSTYHPSSS 360 SK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-24 | 168 | 229 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU856251 | 1e-67 | CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 1e-67 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019260130.1 | 1e-109 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A314LCD5 | 1e-107 | A0A314LCD5_NICAT; Ethylene-responsive transcription factor abr1 | ||||
STRING | XP_009767382.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 6e-27 | ethylene response factor 110 |