PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00564g00212.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 280aa    MW: 30986.8 Da    PI: 6.1561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00564g00212.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08172219455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++iN+++  L+el+P +     k +  a +L   ++Y++sLq
  Peaxi162Scf00564g00212.1 172 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 219
                               8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-16166236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-10166222No hitNo description
PROSITE profilePS5088815.231168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15168229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5172219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGDSAADFQA LNSTNSSPMI MNSNLELLNS MSLEADPNFS SNIQHGILSL SNESFSDHHQ  60
SIHQLPIMAF RTDNMNLSSS IHSQNMYDPA AAAQFFTLGG PSYGCTSSMN SIPESESMMN  120
NNTIPTPQPL VSAGNTIKNC DGRKRRRNNQ KEAEKPREVV HVRAKRGQAT DSHSLAERLR  180
REKINEKLRC LQELVPGCYK TMGMAVMLDV IINYVRSLQN QIDFLSMKLS AASLFYDFNS  240
SEMDDMESMQ GTNGYAAQGM GKSVGEGYGG FPQFQTTWPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754435e-32HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755165e-32HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602728.11e-155PREDICTED: transcription factor BEE 1-like
RefseqXP_016450528.11e-155PREDICTED: transcription factor BEE 1-like
TrEMBLA0A1S3YEV41e-153A0A1S3YEV4_TOBAC; transcription factor BEE 1-like
STRINGXP_009602728.11e-154(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90691724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.18e-57bHLH family protein