PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00559g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 17667 Da PI: 7.0146 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.4e-39 | 13 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasn +lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqq Peaxi162Scf00559g00009.1 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASN------ELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQ 91 7**************************************97......89************************************ PP DUF260 86 qleqlkaelallkee 100 q++ l+++la +++e Peaxi162Scf00559g00009.1 92 QIDLLQTQLAIAQAE 106 **********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.233 | 12 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-38 | 13 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKESGRKQGV ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNELPEHQR 60 GDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDLLQTQL AIAQAEVVHM RMRQFSSMSS 120 GDTGGNSPEN VSPSSRHTQA QPTMSLFTMD MVVDHTNMGE SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 9 | 125 | 7 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 9 | 125 | 7 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 2e-92 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603165.1 | 1e-107 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 6e-66 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A1S4BXL9 | 1e-105 | A0A1S4BXL9_TOBAC; LOB domain-containing protein 4-like | ||||
TrEMBL | A0A3Q7IXK0 | 1e-105 | A0A3Q7IXK0_SOLLC; Uncharacterized protein | ||||
STRING | XP_009603165.1 | 1e-106 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-58 | LOB domain-containing protein 4 |