PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00541g00010.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 390aa MW: 44294.9 Da PI: 7.1763

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00541g00010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.6e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yLk+kv++k+l++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wka Peaxi162Scf00541g00010.1 15 MLPGFRFHPTDEELVGFYLKRKVQQKPLSI-ELIKQLDIYKYDPWDLPKLAAVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 98 579*************************.89***********8778899************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Peaxi162Scf00541g00010.1 99 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 *****956677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-58	14	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.316	15	173	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEERNDQKEK IDEVMLPGFR FHPTDEELVG FYLKRKVQQK PLSIELIKQL DIYKYDPWDL 60 PKLAAVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSITNSNA PKRFLDKHIP PNDSWAICRI FKKANSNAHR 180 AHSWVSPPVP ENTTSDFLTN SHFTSSDEMS LINKTSTSPI QFSASSINDL QNSSIASFST 240 LDLPLYKTLN SMTSYRPQQV SISNHDPITT CYTSSSCNEN SELRKCINMS NIDASSLLLN 300 MSSSIFGDYS ITLPENIEGG VHEETALNEA NYVNMDPMEE QWGNVRSIGL PLNNFPLNMA 360 ADAWKTNLIW DSSPCPSEMS TSYSTNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEERNDQKEK IDEVMLPGFR FHPTDEELVG FYLKRKVQQK PLSIELIKQL DIYKYDPWDL  60
PKLAAVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSITNSNA PKRFLDKHIP PNDSWAICRI FKKANSNAHR  180
AHSWVSPPVP ENTTSDFLTN SHFTSSDEMS LINKTSTSPI QFSASSINDL QNSSIASFST  240
LDLPLYKTLN SMTSYRPQQV SISNHDPITT CYTSSSCNEN SELRKCINMS NIDASSLLLN  300
MSSSIFGDYS ITLPENIEGG VHEETALNEA NYVNMDPMEE QWGNVRSIGL PLNNFPLNMA  360
ADAWKTNLIW DSSPCPSEMS TSYSTNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	17	176	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	17	176	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	17	176	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	17	176	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	17	176	22	171	NAC domain-containing protein 19
3swm_B	2e-55	17	176	22	171	NAC domain-containing protein 19
3swm_C	2e-55	17	176	22	171	NAC domain-containing protein 19
3swm_D	2e-55	17	176	22	171	NAC domain-containing protein 19
3swp_A	2e-55	17	176	22	171	NAC domain-containing protein 19
3swp_B	2e-55	17	176	22	171	NAC domain-containing protein 19
3swp_C	2e-55	17	176	22	171	NAC domain-containing protein 19
3swp_D	2e-55	17	176	22	171	NAC domain-containing protein 19
4dul_A	1e-55	17	176	19	168	NAC domain-containing protein 19
4dul_B	1e-55	17	176	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149288	1e-111	AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence.
GenBank	EF514212	1e-111	EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629525.1	0.0	PREDICTED: putative NAC domain-containing protein 94 isoform X2
Swissprot	Q9ZVH0	1e-106	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3YUB9	0.0	A0A1S3YUB9_TOBAC; protein FEZ-like isoform X2
STRING	XP_009629524.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-108	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]