PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00540g00619.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 460aa    MW: 52498.9 Da    PI: 6.6062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00540g00619.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-16117163148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
  Peaxi162Scf00540g00619.1 117 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKME-ARGGKQCRERWHNHL 163
                               799*****************************.*************97 PP
2Myb_DNA-binding60.92.7e-19169211145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               +++W++eE++ lv+a+kqlG++ W+ Ia++++ gRt++++k++w+
  Peaxi162Scf00540g00619.1 169 KDSWSEEEELMLVEAHKQLGNR-WAEIAKRIP-GRTENSIKNHWN 211
                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.038112167IPR017930Myb domain
SuperFamilySSF466898.44E-30114210IPR009057Homeodomain-like
SMARTSM007171.1E-15116165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-26118170IPR009057Homeodomain-like
CDDcd001678.48E-15120163No hitNo description
PfamPF139213.7E-19120179No hitNo description
SMARTSM007174.7E-18168216IPR001005SANT/Myb domain
PROSITE profilePS5129421.121168218IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-21171216IPR009057Homeodomain-like
CDDcd001679.44E-14171214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
GASAFHPYQN LPKNNLHGLH PNLPLTAIDR FLLGHENYFS PLSGANATSS HANEVSWPTL  60
EPSFMELGYF LHEQSAINYM DDHQENIMIV EAESSQTNKK ESVKKAKEGY STTNLIKGQW  120
TDEEDRKLLR LVKQFGVRKW AQIAEKMEAR GGKQCRERWH NHLRPDIKKD SWSEEEELML  180
VEAHKQLGNR WAEIAKRIPG RTENSIKNHW NATKRRQNSR RNKNRKNPQV GQNEGKHRSN  240
VLQDYIRSKY FNDDSSSTTT SHKEFLHYQT NTITPTNSTT TNATPSYSND DSTSLLTHQT  300
YDEELQFMQN LFGKNSILDN NGAKAIDHSM EDKVTQNLFD NNNSSSSFSA FSSLDFSSDP  360
LASETNITTK RVIHDAENYM NDYYKESTIH CPDLYLSYLL DASTYSSMPF AEASGYGSMN  420
MGMLMNQGSC SSGNNKEVDF MEMASSNSQF SQGNFTKPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-441152172104C-Myb DNA-Binding Domain
1msf_C9e-441152172104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-48HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435339.11e-176PREDICTED: transcriptional activator Myb-like
TrEMBLA0A1S3X5Z31e-175A0A1S3X5Z3_TOBAC; transcriptional activator Myb-like
STRINGXP_009626870.11e-176(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-61myb domain protein 119