PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00531g00332.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 223aa MW: 25524.4 Da PI: 6.157 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 55.4 | 1.2e-17 | 84 | 222 | 221 | 374 |
GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 +++ ++v+ ++k+l+P v+vv+e e++++ +sF++ f e+l + +++E +++++ i+n+++ g++r Peaxi162Scf00531g00332.1 84 PNHFEAVMGAIKGLNPCVIVVSEAEISTDFASFVDCFYETLVSIV----------------PVWLEGVYVRKIIRNIITYHGKQR 152 5667899**************************999999886543................4589999***************** PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy.rveeesgslvlgWkdrpLvsvSaWr 374 + rh +le Wr+ ++++G++++++s++a + a+ll+ + + +g+ + + +++sl+ Wk+ ++ s+ aW+ Peaxi162Scf00531g00332.1 153 VPRHAKLEVWRDLFRRFGLEEAEMSHSALCIASLLVDRSEHHGFlTFDMDRKSLITSWKGTSMASLLAWT 222 ****************************************9996377899*******************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.3E-15 | 84 | 222 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSASASGSPV QRIVLLFADA LQQKIDKEIG NMSLNEDEDM EVFTKEIEDV CLPPTYSIHR 60 NTNYLRQNIN NKKDSILWTL LPWPNHFEAV MGAIKGLNPC VIVVSEAEIS TDFASFVDCF 120 YETLVSIVPV WLEGVYVRKI IRNIITYHGK QRVPRHAKLE VWRDLFRRFG LEEAEMSHSA 180 LCIASLLVDR SEHHGFLTFD MDRKSLITSW KGTSMASLLA WTF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160788.1 | 2e-45 | PREDICTED: scarecrow-like protein 28 | ||||
TrEMBL | A0A0V0HH62 | 2e-44 | A0A0V0HH62_SOLCH; Putative ovule protein | ||||
TrEMBL | M0ZMM4 | 8e-44 | M0ZMM4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003954 | 1e-44 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25358 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 2e-11 | GRAS family protein |