PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00531g00332.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 223aa    MW: 25524.4 Da    PI: 6.157
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00531g00332.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS55.41.2e-1784222221374
                      GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                               +++ ++v+ ++k+l+P v+vv+e e++++ +sF++ f e+l   +                 +++E +++++ i+n+++  g++r
  Peaxi162Scf00531g00332.1  84 PNHFEAVMGAIKGLNPCVIVVSEAEISTDFASFVDCFYETLVSIV----------------PVWLEGVYVRKIIRNIITYHGKQR 152
                               5667899**************************999999886543................4589999***************** PP

                      GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy.rveeesgslvlgWkdrpLvsvSaWr 374
                               + rh +le Wr+ ++++G++++++s++a + a+ll+ + + +g+ + + +++sl+  Wk+ ++ s+ aW+
  Peaxi162Scf00531g00332.1 153 VPRHAKLEVWRDLFRRFGLEEAEMSHSALCIASLLVDRSEHHGFlTFDMDRKSLITSWKGTSMASLLAWT 222
                               ****************************************9996377899*******************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.3E-1584222IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSASASGSPV QRIVLLFADA LQQKIDKEIG NMSLNEDEDM EVFTKEIEDV CLPPTYSIHR  60
NTNYLRQNIN NKKDSILWTL LPWPNHFEAV MGAIKGLNPC VIVVSEAEIS TDFASFVDCF  120
YETLVSIVPV WLEGVYVRKI IRNIITYHGK QRVPRHAKLE VWRDLFRRFG LEEAEMSHSA  180
LCIASLLVDR SEHHGFLTFD MDRKSLITSW KGTSMASLLA WTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160788.12e-45PREDICTED: scarecrow-like protein 28
TrEMBLA0A0V0HH622e-44A0A0V0HH62_SOLCH; Putative ovule protein
TrEMBLM0ZMM48e-44M0ZMM4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039541e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2535822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-11GRAS family protein