PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00526g00520.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 495aa    MW: 52514.1 Da    PI: 4.8105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00526g00520.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.4e-101254445
                              S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45
                              WT+eEd+++ ++ + + g+  +W +Ia+ ++ g++l+++++++ 
  Peaxi162Scf00526g00520.1 12 WTKEEDKIFENGLAIYSGDdnQWMKIAAALP-GKSLEEIIHHYE 54
                              *******************************.**********95 PP
2Myb_DNA-binding43.47.9e-1498142347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+  ++++ +++G g+W++I+r+  + Rt+ q+ s+ qk+
  Peaxi162Scf00526g00520.1  98 AWTEEEHRAFLRGLEKYGRGDWRSISRHCVLSRTPTQVASHAQKF 142
                               7******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.031161IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.4E-5454IPR009057Homeodomain-like
SMARTSM007173.9E-8859IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-101063IPR009057Homeodomain-like
CDDcd001671.24E-81257No hitNo description
PfamPF002492.9E-71254IPR001005SANT/Myb domain
PROSITE profilePS5129418.70991147IPR017930Myb domain
SuperFamilySSF466892.94E-1693147IPR009057Homeodomain-like
SMARTSM007176.3E-1195145IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-1595145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.3E-1197138IPR009057Homeodomain-like
PfamPF002491.5E-1098141IPR001005SANT/Myb domain
CDDcd001675.05E-1198143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSTDQTCNGS FWTKEEDKIF ENGLAIYSGD DNQWMKIAAA LPGKSLEEII HHYELLVEDV  60
NAIEAGNVPL PQYRRMQNLS HHKSRVSKTD VERRRGVAWT EEEHRAFLRG LEKYGRGDWR  120
SISRHCVLSR TPTQVASHAQ KFFSRLKAVD KEKRRTSIHD ITIVDTEITG TSQVSNLENM  180
IGAGGGGPQV ANTSNVVGAF GGGPQVANSS NVVGAFGGGP QVANTSNVVG AFGGGPQVAN  240
SSNVVGAFGG GPQVANASNV VGAFGGRPQI ANTNSVVGAV NSRVVPTDVG MFNESMLSRE  300
STVAGGESSG LGGAFVNTMN GLYSEVNDEF FLGLDDIIME QEQEEGTCNA GVLVDTDGRS  360
QLPSKQPSTA AGSEIYSHPV TSIGNELEVL ISEHMVEDNE INSIFDAGKS APSHTMLSNA  420
AHSGVYSHTV ANVGAKNAFD NPGSAPRGGL TIHSQKLPFF APSSDLGVGL CPKSNTSIDD  480
EDIFDLEDLF KDPMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-14874774RADIALIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444771.11e-100PREDICTED: uncharacterized protein LOC107770029
TrEMBLA0A1S3XXU36e-99A0A1S3XXU3_TOBAC; uncharacterized protein LOC107770029
STRINGXP_009609269.14e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-59MYB family protein