PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00523g00004.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 1050aa    MW: 116599 Da    PI: 5.0144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00523g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-194288148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Peaxi162Scf00523g00004.1 42 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 88
                              799****************************9.************986 PP
2Myb_DNA-binding64.91.5e-2094140148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Peaxi162Scf00523g00004.1  94 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 140
                               79******************************.*************97 PP
3Myb_DNA-binding51.13.1e-16146188145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + +WT+eE++ l++a++ +G++ W+   ++++ gRt++++k++w+
  Peaxi162Scf00523g00004.1 146 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNSIKNHWN 188
                               579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4713788IPR017930Myb domain
SuperFamilySSF466897.18E-163894IPR009057Homeodomain-like
SMARTSM007171.0E-154190IPR001005SANT/Myb domain
PfamPF002492.2E-164288IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-234395IPR009057Homeodomain-like
CDDcd001672.10E-144588No hitNo description
PROSITE profilePS5129433.95689144IPR017930Myb domain
SuperFamilySSF466897.49E-3291187IPR009057Homeodomain-like
SMARTSM007175.3E-1993142IPR001005SANT/Myb domain
PfamPF002492.1E-1894140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2896143IPR009057Homeodomain-like
CDDcd001678.39E-1796140No hitNo description
Gene3DG3DSA:1.10.10.606.9E-22144195IPR009057Homeodomain-like
PROSITE profilePS5129419.814145195IPR017930Myb domain
SMARTSM007173.2E-15145193IPR001005SANT/Myb domain
PfamPF002491.4E-14146189IPR001005SANT/Myb domain
CDDcd001671.00E-11148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MNRLFESDSV KFSKYSNSLW NALSSGANFN RRTSGPTRRS TKGQWTPEED EILRKAVQRF  60
KGKNWKKIAE CFKDRTDVQC LHRWQKVLNP ELVKGPWSKE EDEVIVELVK KYGPKKWSTI  120
AQHLPGRIGK QCRERWHNHL NPSINKEAWT QEEELTLIRA HQIYGNKWAE LTKYLPGRTD  180
NSIKNHWNSS VKKKLDSYLA SGLLAQFPAL PNVNHQNQSI PSSVKLQQSS EDDSVRKEGT  240
EMEEVSECSQ GSNLAGCSQS TSDMGNRFVH TREDRKLLED SNYRMDPSSS SAPCSEYYTP  300
AFDDITFSME EVPSELSESK FLEQNLSHDW RTSMGKDWQF NPDDDIPDIS PLELMQESSG  360
LFMQCLTGNG NHDMVTFPQK NAMSFGTTTN MGGMVVGLDK PTEMFTSVDD CRMVYPEAGI  420
PQCFPSETGM NGVDETADSL IYQSSNYQIS EADMSIEKCN PLCSDVMGSQ PFSVPSQFSS  480
EQSSSMFGTV SNQFHDLSHG NPALESHTSK CDAFLYPVES GTPCDNIMND PLLKEQLHQT  540
EDSVQLVSVN DFSSTPPSTL QTRPLVNENL PVPEEQKDAG ALCYEPPRFP SLDVPFFSCD  600
LIQSGTDAQQ EYSPLGIRQL MMSSVNCLTP FRLWDSPSRD GSPDALLRSA AKTFTSTPSI  660
LKKRHRDLVS PLSEKRCEKK LESDFRREAF SDLARDFSRL DVMVDESANE KATISSATAD  720
QALELRASSE DKENISPTED GRKEEDKGHN GLLSSGTSER QLDGADVHYK EHGTREGKRV  780
GANDAKGKIK QPSGVLVELN TSDLFFSPDR FGAKSDRATN LSNKALGNQY ARRLEAASNQ  840
GSVSSSFETS CLSVICSPRI RGKKDGSSFI ITTSMQSATT STALDNSAET SGNGVGAETV  900
NISGETPYKR SFESPSAWKS PWFINSFMSS PRLDTELTFE DLALFLSPGE RSYDAIGLMK  960
QLSEQTAGAF ADAQEVLGGE TPESIIRGRN SKNQKANENH SLLSANAVSE RRTLDFSECG  1020
SPGKGKDAEN FCTNDRSFSS PSSYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-69421956159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-69421956159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561230.0AB056123.1 Nicotiana tabacum NtmybA2 mRNA for Myb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508080.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A1S4D3R50.0A0A1S4D3R5_TOBAC; myb-related protein 3R-1-like
STRINGXP_009782666.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein