PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00520g00614.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

CPP

Protein Properties

Length: 787aa MW: 85835.5 Da PI: 6.353

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00520g00614.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.9	3.1e-16	499	537	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk Peaxi162Scf00520g00614.1 499 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 537 689**********************************96 PP
2	TCR	51.1	2.7e-16	584	622	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Peaxi162Scf00520g00614.1 584 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 622 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	20	No hit	No description
SMART	SM01114	1.6E-17	498	539	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.877	499	624	IPR005172	CRC domain
Pfam	PF03638	9.7E-12	501	536	IPR005172	CRC domain
SMART	SM01114	7.5E-18	584	625	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.7E-12	586	622	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MLKCTVGGLY HILLVLLYSC FFFPLRNLMV FFSSMQESPV FNFLNNLSPI KLDKSMHFHQ 60 TLNSLSFASI PSVFTSPHVS SIRESRFLRR HLLSDPSKPE FASDNGVKVD TDEGTLDAVN 120 NSNEPKESFG SGISVVEAPA SPSHECSKLT VELARNLNYE CSSPSTLPTG GIGSRGLSEF 180 AGSSVTYVPL VQEMSGKGLL RCDMNMDRIK ETDPNKEASG CDWENLISDA TDLLIFDSPG 240 DPEAFTKATG PNFRPLEFVS NEMQNMQNIS QVSTSEYGGD GSETEKPSTQ PGEESQLMDY 300 AETQNMKPDA SLTNAGMGVG QSEKNDNEMV STLYRGMRRR CLVFEMGGTR RKHMNEVSGS 360 SAVQEADGNL ASSENQLVTS KTVNESSRCI LPGIGLHLNA LAASSKDGKV VKHEANASGK 420 QLLITSCSAV NFHPLVTGQE SLSKSLPETS REGEIVPFEN SIPLMEDVCQ APGYVNNEEL 480 NQSSPKKKRR RLEPGEGESC KRCNCKKSKC LKLYCECFAA GVYCVEPCAC QDCFNKPIHE 540 DTVLATRKQI ESRNPLAFAP KVIRTTDSLS ETVDDSSKTP ASARHKRGCN CKKSGCLKKY 600 CECYQGGVGC SINCRCEGCK NAFGRKDGTD GDAEEEGTDA YEKSIIDRTS HKNLVQSDVE 660 QNPDSATPAT PLSFGRPPMQ IPFSLKNKPP RSSFLSIGSS SGVYAGQGIG RPNFFQPHPK 720 FESIQEDEMP EILQETSSPI SGIKTASPNR KRVSPPHGDF GNSPSRRSSR KLILQSIPSF 780 PSLTPNP

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MLKCTVGGLY HILLVLLYSC FFFPLRNLMV FFSSMQESPV FNFLNNLSPI KLDKSMHFHQ  60
TLNSLSFASI PSVFTSPHVS SIRESRFLRR HLLSDPSKPE FASDNGVKVD TDEGTLDAVN  120
NSNEPKESFG SGISVVEAPA SPSHECSKLT VELARNLNYE CSSPSTLPTG GIGSRGLSEF  180
AGSSVTYVPL VQEMSGKGLL RCDMNMDRIK ETDPNKEASG CDWENLISDA TDLLIFDSPG  240
DPEAFTKATG PNFRPLEFVS NEMQNMQNIS QVSTSEYGGD GSETEKPSTQ PGEESQLMDY  300
AETQNMKPDA SLTNAGMGVG QSEKNDNEMV STLYRGMRRR CLVFEMGGTR RKHMNEVSGS  360
SAVQEADGNL ASSENQLVTS KTVNESSRCI LPGIGLHLNA LAASSKDGKV VKHEANASGK  420
QLLITSCSAV NFHPLVTGQE SLSKSLPETS REGEIVPFEN SIPLMEDVCQ APGYVNNEEL  480
NQSSPKKKRR RLEPGEGESC KRCNCKKSKC LKLYCECFAA GVYCVEPCAC QDCFNKPIHE  540
DTVLATRKQI ESRNPLAFAP KVIRTTDSLS ETVDDSSKTP ASARHKRGCN CKKSGCLKKY  600
CECYQGGVGC SINCRCEGCK NAFGRKDGTD GDAEEEGTDA YEKSIIDRTS HKNLVQSDVE  660
QNPDSATPAT PLSFGRPPMQ IPFSLKNKPP RSSFLSIGSS SGVYAGQGIG RPNFFQPHPK  720
FESIQEDEMP EILQETSSPI SGIKTASPNR KRVSPPHGDF GNSPSRRSSR KLILQSIPSF  780
PSLTPNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-18	501	621	12	120	Protein lin-54 homolog
5fd3_B	5e-18	501	621	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	484	491	PKKKRRRL
2	485	490	KKKRRR
3	487	491	KRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770245.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBL	A0A1U7W7L2	0.0	A0A1U7W7L2_NICSY; protein tesmin/TSO1-like CXC 2 isoform X2
STRING	XP_009770238.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2467	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-135	TESMIN/TSO1-like CXC 2