PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00520g00001.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 544aa    MW: 60721.5 Da    PI: 5.9976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00520g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4256.1e-1301745441374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l+elL++cAeav++ d + a+ l++ l++++s +g+pmqRl ay++e+L+ar+++s+s +yk+l+++e +   sse l+++++++
  Peaxi162Scf00520g00001.1 174 LKELLVACAEAVADADISTAEVLMEVLEQRVSVSGEPMQRLCAYMLEGLRARILSSGSIIYKKLKCNEPT---SSELLSYMQVLY 255
                               5799*****************************************************************9...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                               +++P++kf+++ aN  I ea+ +e+r+HiiDf+i qG QW+ L++ La Rp+gpp +RiT v++++s   +   l+ +g +Lakf
  Peaxi162Scf00520g00001.1 256 HMCPYYKFAYISANVVIEEAMRNENRIHIIDFQIAQGSQWMFLMHNLARRPGGPPFVRITCVDDSQSAhaRGGGLQLVGVKLAKF 340
                               ****************************************************************9988889999*********** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               Ae++gvpfef+  +a +  +++le+Lrv++gEalaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v +veqe+++n+++F
  Peaxi162Scf00520g00001.1 341 AESCGVPFEFHG-AAMSGCQVQLENLRVRQGEALAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVSLVEQESNTNTAPF 424
                               ************.8999******************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               l rf+e+l+yy+a+f+s++a  pr++ +ri+ E+++++r++vn++acega+r+erhe ++kWr+rl +a F+p pls ++ + +k
  Peaxi162Scf00520g00001.1 425 LPRFCETLDYYTAMFESIDAARPRDDTQRISAEEHCVARDVVNIIACEGADRVERHEPFGKWRSRLLMARFTPCPLSPSVGEAVK 509
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +l++++ + yr+ e++g+l+lgWk+r+L ++SaWr
  Peaxi162Scf00520g00001.1 510 DMLKEYSPN-YRLAENQGALYLGWKNRALATCSAWR 544
                               *******55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.067148525IPR005202Transcription factor GRAS
PfamPF035142.1E-127174544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQASQGPQRS GSVHNLYHQP MQQVQQYYTP YQVFDNNIYD NSSSSGTQFS FQTQNEQFFT  60
LDSFPATDYA ICEVAPSVSV SSNRSTFSAQ CSQSDMSDPH HSYDNSCGSP VSGCSGVDDG  120
NGMKHVLTEL KNKLRGPESD TDDSSSCSFN DVVSKPSSLT RLNQVLDIAS RLDLKELLVA  180
CAEAVADADI STAEVLMEVL EQRVSVSGEP MQRLCAYMLE GLRARILSSG SIIYKKLKCN  240
EPTSSELLSY MQVLYHMCPY YKFAYISANV VIEEAMRNEN RIHIIDFQIA QGSQWMFLMH  300
NLARRPGGPP FVRITCVDDS QSAHARGGGL QLVGVKLAKF AESCGVPFEF HGAAMSGCQV  360
QLENLRVRQG EALAVNFPYM LHHMPDESVS TMNHRDRLLR LVKSLSPKIV SLVEQESNTN  420
TAPFLPRFCE TLDYYTAMFE SIDAARPRDD TQRISAEEHC VARDVVNIIA CEGADRVERH  480
EPFGKWRSRL LMARFTPCPL SPSVGEAVKD MLKEYSPNYR LAENQGALYL GWKNRALATC  540
SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6018154326378Protein SCARECROW
5b3h_A4e-6018154325377Protein SCARECROW
5b3h_D4e-6018154325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792736.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_016448345.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S3Y8A30.0A0A1S3Y8A3_TOBAC; scarecrow-like protein 13
TrEMBLA0A1U7XSY60.0A0A1U7XSY6_NICSY; scarecrow-like protein 13
STRINGXP_009792736.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13