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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peaxi162Scf00519g00510.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 127aa MW: 14985.4 Da PI: 10.3155 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 5 | 49 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
+WT Ed l++++ +++ +W +I +++ +t++q++s++
Peaxi162Scf00519g00510.1 5 SWTRYEDILFKQVLILYPEQivdRWQLITDHIP-DKTPEQIISHYD 49
7*****************99*************.**********95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 9.298 | 1 | 56 | IPR017930 | Myb domain |
| SMART | SM00717 | 1.6E-4 | 2 | 54 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 5.08E-10 | 4 | 63 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 2.5E-7 | 4 | 50 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 7.6E-4 | 4 | 52 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 7.27E-7 | 5 | 48 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 127 aa Download sequence Send to blast |
MSTTSWTRYE DILFKQVLIL YPEQIVDRWQ LITDHIPDKT PEQIISHYDD LVHDVLEIVS 60 GRVEPPRPQH KWPVILKYFI RQQAMKKKRK RSSIHDITTA VNTGNLLEVQ RQARIGKLKA 120 IRGNFSL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 86 | 91 | KKRKRS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009795456.1 | 2e-24 | PREDICTED: transcription factor DIVARICATA-like | ||||
| Refseq | XP_016473251.1 | 2e-24 | PREDICTED: transcription factor DIVARICATA-like | ||||
| TrEMBL | A0A1S4A9J2 | 5e-23 | A0A1S4A9J2_TOBAC; transcription factor DIVARICATA-like | ||||
| TrEMBL | A0A1U7Y0L8 | 5e-23 | A0A1U7Y0L8_NICSY; transcription factor DIVARICATA-like | ||||
| STRING | XP_009795456.1 | 8e-24 | (Nicotiana sylvestris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G04760.1 | 1e-16 | MYB family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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