PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00516g00673.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 370aa    MW: 41182 Da    PI: 6.2802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00516g00673.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.6e-191562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l+d++++ G g+W++ ++  g++R++k+c++rw +yl
  Peaxi162Scf00516g00673.1 15 KGPWTPEEDQQLLDYIHKNGHGNWRALPKLAGLNRCGKSCRLRWTNYL 62
                              79********************************************97 PP
2Myb_DNA-binding54.92e-1768113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++++E+ l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Peaxi162Scf00516g00673.1  68 RGKFSEDEERLIIKLHSLLGNK-WSAIATRLP-GRTDNEIKNYWNTHL 113
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1171062IPR017930Myb domain
SuperFamilySSF466892.12E-3112109IPR009057Homeodomain-like
SMARTSM007177.1E-161464IPR001005SANT/Myb domain
PfamPF002498.8E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241669IPR009057Homeodomain-like
CDDcd001679.40E-131762No hitNo description
PROSITE profilePS5129428.20663117IPR017930Myb domain
SMARTSM007173.3E-1767115IPR001005SANT/Myb domain
PfamPF002491.4E-1668113IPR001005SANT/Myb domain
CDDcd001673.44E-1370113No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRSAESDDM SGLKKGPWTP EEDQQLLDYI HKNGHGNWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDEERLII KLHSLLGNKW SAIATRLPGR TDNEIKNYWN THLRKKLLQM  120
GIDPVTHRPR TDHINIFNAL IGNIPPQLLA AASSNFMNTD NTSINNLTNI LFSDTAQQLV  180
HQIQLLQNSS SLLVHSLFNN AATSTACPLN MEGLNQNFGL QNLCDQNQLQ EYNSILMNYQ  240
QFLSNTSDSL TGFALNSSNS TDISATNGCD QLMVMSGTCS TSSSCGNNAA SVTHANDDQM  300
KNISKAALHH DTPECPSSSN KMPQGNMISD IYPKQELVQP SSASMSTFEP WGQIMGDEEA  360
SDSYWRDIIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776410.11e-176PREDICTED: myb-related protein 315-like
TrEMBLA0A1U7WQ821e-175A0A1U7WQ82_NICSY; myb-related protein 315-like
STRINGXP_009776410.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-84myb domain protein 9