PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00516g00645.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 513aa    MW: 57006.9 Da    PI: 6.3318
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00516g00645.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.73.4e-37281202103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sws+++nsfvv++  efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Peaxi162Scf00516g00645.1  28 FLSKTYDMVNDPSTDSVVSWSKSNNSFVVWNVPEFAKDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 103
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+k+ll++i r+k +
  Peaxi162Scf00516g00645.1 104 LRGHKHLLKSISRRKPS 120
                               **************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-4021112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6224117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
QFFCVKIRWK MDGLNGNTAA IGNSPPPFLS KTYDMVNDPS TDSVVSWSKS NNSFVVWNVP  60
EFAKDILPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGHKHL LKSISRRKPS  120
QVQGHQQTPS QVQNTSVGSC VEVGKFGIDE EVERLKRDKD VLMQELVKLR QQQQATDQHL  180
QTVGQRVQLM EKRQQQMMSF LAKAMQSPGF VAQLVHQQNG NTRRINGTNK KRRLPDQEEE  240
NVAGNADNAL PDGRMVSYQP SMNEAAKALL RQILNSNAPG KLDNGFKNRN GFLTNNALPP  300
QNALESGATS SRISGVTLSE VLSTTSQSNL MSDSGFPFNS ISSVMSETQS STTVVHGEPK  360
VPKLPKLDAL HSHTEHNLPE FSQGQRIKSQ DTLGISGLER SETGSVPYID TPQGILDGIT  420
TVGPDECSAD TNVDVLLDDM PKLPAINDIF WDQILSASPL TGDTDDIGSL AMEDGLEKEE  480
DFLGVQVNDW DKLKHMHHLT EQMGLLSSAS LIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2871178129Heat shock factor protein 1
5d5v_B5e-2871178129Heat shock factor protein 1
5d5v_D5e-2871178129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465973.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-152HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A1S3ZNY70.0A0A1S3ZNY7_TOBAC; heat stress transcription factor A-1b-like
STRINGXP_009623591.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-137heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]