PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00515g00055.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 588aa    MW: 64553.6 Da    PI: 4.4368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00515g00055.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.11.4e-1062225873373
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               + L+e A+ ++++d e a + ++rl+e +s++gdp++R+ +yf+eAL ++l+ + ++l+    +s+   ++++e +  +k+f+++
  Peaxi162Scf00515g00055.1 222 KSLVEYAK-LADSDPEIALKSITRLRESVSQHGDPTERVGFYFLEALYNKLSCELEKLS----TSS---TTTEELTLCYKAFNDA 298
                               56888888.67779**************************************9333333....333...347899999******* PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfA 169
                               +P+ kf+hltaNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA
  Peaxi162Scf00515g00055.1 299 CPYSKFAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSSGKPvSIRISGIPSVLLGdtPAASLLATGNRLRDFA 383
                               *************************************************88888*********776688999************* PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               + l+++fef++ + + +e+l+ +++r++p+E+laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  Fl
  Peaxi162Scf00515g00055.1 384 KLLDLNFEFEA-ILTPVEELNESSFRIDPDEMLAVNFMLQLYNLLDETSVGVE---TALNLAKSLNPSIVTLGEYEVSLNKVGFL 464
                               ***********.799******************************77766666...9**************************** PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqa 337
                               +rf +aleyys++f+sl+ +l r+s er+ vEr llgr+i+ ++  +++   rre +e +e+W+e +e aGFkpv+ls++a++qa
  Peaxi162Scf00515g00055.1 465 QRFKNALEYYSTVFESLDPSLTRDSPERVQVERLLLGRRISGALVGQEDVgtRRECMEDKEHWKELMEGAGFKPVTLSHYAMSQA 549
                               *****************************************887766654469******************************** PP

                      GRAS 338 klllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                               k ll +++ s  y + ++   ++ l W+d+pL++vS+W
  Peaxi162Scf00515g00055.1 550 KILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLTVSSW 587
                               ********9999998877665555************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.136194566IPR005202Transcription factor GRAS
PfamPF035145.0E-104222587IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAFMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEVQQQHQQF LGVNPLCLSP YPSPTLGYGL  60
TGGSGSFPLT DPFQVASVPE GGTGDPGGFQ FPNLEHQFRF ADFNSGPGTG GGEFDSDEWM  120
ESLMGGGDST ESSNLQSGCD AWQTSSEFTP LYADPFTSCP SRLSTGCSES LVGAIFSETQ  180
KNLNPVWVPP SSAPAIQESK LVSSVDVSST FPELFSSKPV LKSLVEYAKL ADSDPEIALK  240
SITRLRESVS QHGDPTERVG FYFLEALYNK LSCELEKLST SSTTTEELTL CYKAFNDACP  300
YSKFAHLTAN QAILEATEKA TRIHIVDFGI VHGIQWAAFL QALATRSSGK PVSIRISGIP  360
SVLLGDTPAA SLLATGNRLR DFAKLLDLNF EFEAILTPVE ELNESSFRID PDEMLAVNFM  420
LQLYNLLDET SVGVETALNL AKSLNPSIVT LGEYEVSLNK VGFLQRFKNA LEYYSTVFES  480
LDPSLTRDSP ERVQVERLLL GRRISGALVG QEDVGTRREC MEDKEHWKEL MEGAGFKPVT  540
LSHYAMSQAK ILLWNYNYSS SYGLIDSPPG FLSLAWNDKP LLTVSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1522175881375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340610.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM1B7420.0M1B742_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000385740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein