PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00503g00311.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 306aa    MW: 33458.8 Da    PI: 5.0046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00503g00311.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.6e-17131177455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Peaxi162Scf00503g00311.1 131 VHNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 177
                               6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-19124185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-20124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.898127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.58E-19130181No hitNo description
PfamPF000102.5E-14131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MADPYKSTNP QSSLESEDMS SFFLNFLHTS SASASASASG TFFNRSGPVP GTDSSSNLNF  60
SDPARFYQPE GVDNVFGVGD CDAMNLANKR EFLDDDKVDN FGFSSEECDG LEMQNNQSNS  120
RSSKRSRSAE VHNLSEKRRR SRINEKLKAL QTLIPNSNKT DKASMLDEAI EYLKQLQLQV  180
QMLTLRNGMS LYPGYVPGSL QSMQLPSGTE FDGRSFMLSA NGGATLPGNR EMLPTAFEFS  240
NQNPSVKPTI TSNNTNSLAL DTTLQNHYGL LNHLASSKDM CRDDTLSRLH LDMSCSGNNS  300
SSGVSS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-91HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354865.11e-163PREDICTED: transcription factor SPATULA-like
RefseqXP_025886303.11e-158probable serine/threonine-protein kinase At1g01540
TrEMBLA0A3Q7H2101e-162A0A3Q7H210_SOLLC; Uncharacterized protein
STRINGSolyc04g078690.2.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-38bHLH family protein