PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00498g00617.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YA
Protein Properties Length: 298aa    MW: 33536.1 Da    PI: 10.0398
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00498g00617.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.1e-32159215158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R Rg+gGrF
  Peaxi162Scf00498g00617.1 159 DGPIYVNAKQYNGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGTGGRF 215
                               57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-36157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.76158218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22161183IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-27161215IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860163183IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-22192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MFLSFLSSFI QLSSMMMRWI VIQEVTIIGI KILKEMKSLD PDLQGEKLQL THSAMSSKHE  60
MTALVKTNSQ DQCASSEYVH DERYGRDMQA QKKPAFFRNP EYSTSSLQIE VAHSIGFSPV  120
GYSDPYMSGL YAAYGPQAFP QMMGIVPARV PLPLEVAEDG PIYVNAKQYN GILRRRQIRA  180
KLEAQNKLVK NRKPYLHESR HLHAVNRVRG TGGRFLSTKK GHHSDPITPT NSTSSRDSVE  240
REGSTSAFSS VRQDVHNGIS FQQPDHRAFN VSSHMDVTMK DRSGFSCNGT QQRAPVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20161226472NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897600.0AM489760.1 Petunia x hybrida partial mRNA for YA5 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592750.11e-145PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLA0A1J6IS461e-144A0A1J6IS46_NICAT; Nuclear transcription factor y subunit a-3
TrEMBLA0A1U7V4961e-144A0A1U7V496_NICSY; nuclear transcription factor Y subunit A-7-like
STRINGXP_009592750.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-41nuclear factor Y, subunit A3