PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00498g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 331aa MW: 35936.9 Da PI: 8.9015 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.8e-14 | 128 | 172 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++ ++ + ++lG+g+W+ I+rt+ ++Rt+ q+ s+ qky Peaxi162Scf00498g00013.1 128 PWTEEEHKNFLIGLEKLGKGDWRGISRTFVTTRTPTQVASHAQKY 172 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.941 | 121 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-17 | 123 | 178 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-18 | 124 | 176 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.9E-10 | 125 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-8 | 125 | 175 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-10 | 128 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.16E-8 | 128 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRKCSHCGY IGHNSRTCNT FKAGAGAGAG ASASASTASF IGGLRLFGVQ LDISSSSNNS 60 SIHLKKSFSL DCLSSTYVSP HSSSPSPSSS LSSSRLSANE SCEKSTSING YLSDGLVGRV 120 EERKKGVPWT EEEHKNFLIG LEKLGKGDWR GISRTFVTTR TPTQVASHAQ KYFLRQSNLN 180 KKKRRSSLFD MAERNNKIHD DAKTTKSKYD DLAYNCLGTT KEACQEITRP SLLDLNSFEE 240 EMPTKDHHQE CENSQVQPEE KIHSVPAIWG HGISHNSHHS SLKKVPVNKS STSSNGAVDL 300 ELTLSAPRNN NVDMNNSSSP AAFLIGPITV T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 184 | KKKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245348.1 | 1e-114 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | A0A1J6IR48 | 1e-113 | A0A1J6IR48_NICAT; Transcription factor myb1r1 | ||||
TrEMBL | A0A1S4BSF4 | 1e-112 | A0A1S4BSF4_TOBAC; myb-like protein J | ||||
STRING | XP_009590196.1 | 1e-112 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3385 | 21 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 3e-52 | MYB_related family protein |